LOC_Os06g09660

Description : auxin response factor, putative, expressed

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os06g09660
Cluster	HCCA clusters: cluster_0106

Target	Alias	Description	ECC score	Gene Family Method
A4A49_26861	No alias	auxin response factor 18	0.03	Orthogroups_2024-Update
A4A49_30370	No alias	auxin response factor 11	0.02	Orthogroups_2024-Update
At1g34310	No alias	Auxin response factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9XID4]	0.03	Orthogroups_2024-Update
At1g34410	No alias	Putative auxin response factor 21...	0.03	Orthogroups_2024-Update
At1g59750	No alias	Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]	0.03	Orthogroups_2024-Update
At2g33860	No alias	Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]	0.02	Orthogroups_2024-Update
Bradi3g04920	No alias	auxin response factor 6	0.02	Orthogroups_2024-Update
Bradi4g17410	No alias	auxin response factor 2	0.03	Orthogroups_2024-Update
Brara.A02353.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.F01355.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.02	Orthogroups_2024-Update
Brara.F02033.1	No alias	ARF-type transcription factor	0.04	Orthogroups_2024-Update
Brara.G01369.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.G03536.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Brara.I00676.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Brara.J01551.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.02	Orthogroups_2024-Update
GRMZM2G390641	No alias	auxin response factor 16	0.03	Orthogroups_2024-Update
Glyma.01G103500	No alias	auxin response factor 9	0.04	Orthogroups_2024-Update
Glyma.03G070500	No alias	auxin response factor 9	0.02	Orthogroups_2024-Update
Glyma.11G145500	No alias	auxin response factor 10	0.04	Orthogroups_2024-Update
Glyma.13G112600	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Glyma.13G174000	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Glyma.15G078800	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
Glyma.16G000300	No alias	auxin response factor 1	0.02	Orthogroups_2024-Update
Glyma.17G047100	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
HORVU3Hr1G072340.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
LOC_Os04g57610	No alias	auxin response factor, putative, expressed	0.03	Orthogroups_2024-Update
PSME_00012134-RA	No alias	(at1g30330 : 662.0) Encodes a member of the auxin...	0.02	Orthogroups_2024-Update
Potri.002G207050	No alias	auxin response factor 2	0.02	Orthogroups_2024-Update
Potri.009G014800	No alias	auxin response factor 10	0.02	Orthogroups_2024-Update
Pp1s279_9V6	No alias	arf gene for putative auxin response factor protein ARF	0.03	Orthogroups_2024-Update
Pp1s339_47V6	No alias	auxin response factor 10	0.02	Orthogroups_2024-Update
Pp1s6_240V6	No alias	auxin response	0.02	Orthogroups_2024-Update
Seita.1G195500.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Seita.3G147000.1	No alias	ARF-type transcription factor	0.06	Orthogroups_2024-Update
Seita.5G438100.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Seita.7G169600.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Seita.8G135700.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Seita.9G219800.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.002G290600.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.006G149600.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.010G073600.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.01	Orthogroups_2024-Update
Solyc03g031970	No alias	Auxin response factor (AHRD V3.3 *** A0A191T8S7_SALMI)	0.04	Orthogroups_2024-Update
Solyc07g043620	No alias	Auxin Response Factor 6B	0.02	Orthogroups_2024-Update
Sopen01g039790	No alias	AUX/IAA family	0.03	Orthogroups_2024-Update
Sopen03g005820	No alias	Auxin response factor	0.02	Orthogroups_2024-Update
Sopen04g034850	No alias	Auxin response factor	0.03	Orthogroups_2024-Update
Sopen08g004260	No alias	Auxin response factor	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	InterProScan predictions
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
MF	GO:0003824	catalytic activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004601	peroxidase activity	IEP	Predicted GO
MF	GO:0004672	protein kinase activity	IEP	Predicted GO
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0005088	Ras guanyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0005089	Rho guanyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0005102	signaling receptor binding	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
BP	GO:0006464	cellular protein modification process	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0006643	membrane lipid metabolic process	IEP	Predicted GO
BP	GO:0006665	sphingolipid metabolic process	IEP	Predicted GO
BP	GO:0006672	ceramide metabolic process	IEP	Predicted GO
BP	GO:0006793	phosphorus metabolic process	IEP	Predicted GO
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006979	response to oxidative stress	IEP	Predicted GO
BP	GO:0007186	G protein-coupled receptor signaling pathway	IEP	Predicted GO
MF	GO:0008083	growth factor activity	IEP	Predicted GO
BP	GO:0008104	protein localization	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
BP	GO:0008283	cell proliferation	IEP	Predicted GO
BP	GO:0015031	protein transport	IEP	Predicted GO
BP	GO:0015833	peptide transport	IEP	Predicted GO
BP	GO:0015988	energy coupled proton transmembrane transport, against electrochemical gradient	IEP	Predicted GO
BP	GO:0015991	ATP hydrolysis coupled proton transport	IEP	Predicted GO
MF	GO:0016301	kinase activity	IEP	Predicted GO
MF	GO:0016307	phosphatidylinositol phosphate kinase activity	IEP	Predicted GO
BP	GO:0016310	phosphorylation	IEP	Predicted GO
MF	GO:0016462	pyrophosphatase activity	IEP	Predicted GO
MF	GO:0016740	transferase activity	IEP	Predicted GO
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Predicted GO
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Predicted GO
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Predicted GO
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Predicted GO
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Predicted GO
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Predicted GO
MF	GO:0016887	ATPase activity	IEP	Predicted GO
MF	GO:0017016	Ras GTPase binding	IEP	Predicted GO
MF	GO:0017048	Rho GTPase binding	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Predicted GO
BP	GO:0019538	protein metabolic process	IEP	Predicted GO
MF	GO:0019829	cation-transporting ATPase activity	IEP	Predicted GO
MF	GO:0022853	active ion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0030246	carbohydrate binding	IEP	Predicted GO
MF	GO:0030545	receptor regulator activity	IEP	Predicted GO
MF	GO:0031267	small GTPase binding	IEP	Predicted GO
MF	GO:0031683	G-protein beta/gamma-subunit complex binding	IEP	Predicted GO
BP	GO:0033036	macromolecule localization	IEP	Predicted GO
CC	GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
BP	GO:0036211	protein modification process	IEP	Predicted GO
MF	GO:0036442	proton-exporting ATPase activity	IEP	Predicted GO
MF	GO:0042625	ATPase coupled ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0042886	amide transport	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
BP	GO:0043412	macromolecule modification	IEP	Predicted GO
BP	GO:0044255	cellular lipid metabolic process	IEP	Predicted GO
BP	GO:0044267	cellular protein metabolic process	IEP	Predicted GO
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	Predicted GO
MF	GO:0044877	protein-containing complex binding	IEP	Predicted GO
BP	GO:0045184	establishment of protein localization	IEP	Predicted GO
MF	GO:0046961	proton-transporting ATPase activity, rotational mechanism	IEP	Predicted GO
MF	GO:0048018	receptor ligand activity	IEP	Predicted GO
BP	GO:0071702	organic substance transport	IEP	Predicted GO
BP	GO:0071705	nitrogen compound transport	IEP	Predicted GO
BP	GO:0090662	ATP hydrolysis coupled transmembrane transport	IEP	Predicted GO
BP	GO:0099131	ATP hydrolysis coupled ion transmembrane transport	IEP	Predicted GO
BP	GO:0099132	ATP hydrolysis coupled cation transmembrane transport	IEP	Predicted GO
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	127	228
IPR010525	Auxin_resp	253	335
IPR033389	AUX/IAA_dom	935	1026

External Links

No external refs found!

LOC_Os06g09660

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation