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  5. Solyc08g015750

Solyc08g015750


Description : F-box/RNI-like superfamily protein, putative (AHRD V3.3 *** A0A061GGX0_THECC)


Gene families : OG_42_0000867 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000867_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc08g015750
Cluster HCCA clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Solyc04g072320 No alias RNA polymerase I subunit 43 (AHRD V3.3 --* AT1G60620.2) 0.04 Orthogroups_2024-Update
Solyc04g072590 No alias F-box/RNI-like superfamily protein (AHRD V3.3 *** AT5G02930.1) 0.03 Orthogroups_2024-Update
Sopen02g036860 No alias F-box domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006566 FBD 328 374
IPR001810 F-box_dom 10 48
No external refs found!