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  5. LOC_Os06g12780

LOC_Os06g12780


Description : OsDegp10 - Putative Deg protease homologue, expressed


Gene families : OG_42_0000973 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000973_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os06g12780
Cluster HCCA clusters: cluster_0094

Target Alias Description ECC score Gene Family Method Actions
Brara.D01039.1 No alias protease *(Deg) 0.03 Orthogroups_2024-Update
Potri.008G079900 No alias DegP protease 10 0.03 Orthogroups_2024-Update
Solyc12g062290 No alias Protease Do-like 9 (AHRD V3.3 *** W9SJ69_9ROSA) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001478 PDZ 388 473
No external refs found!