Solyc01g087500

Description : DNA topoisomerase 2 (AHRD V3.3 *** K4AYE0_SOLLC)

Gene families : OG_42_0003889 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003889_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc01g087500
Cluster	HCCA clusters: Cluster_27

Target	Alias	Description	ECC score	Gene Family Method
98330	No alias	topoisomerase II	0.04	Orthogroups_2024-Update
A4A49_12016	No alias	dna topoisomerase 2	0.06	Orthogroups_2024-Update
At3g23890	No alias	DNA topoisomerase 2 [Source:UniProtKB/Swiss-Prot;Acc:P30182]	0.04	Orthogroups_2024-Update
Brara.A00830.1	No alias	DNA topoisomerase *(TOP2)	0.17	Orthogroups_2024-Update
Cre01.g009250	No alias	topoisomerase II	0.05	Orthogroups_2024-Update
Glyma.10G090000	No alias	topoisomerase II	0.11	Orthogroups_2024-Update
Glyma.15G276000	No alias	topoisomerase II	0.13	Orthogroups_2024-Update
Kfl00053_0310	kfl00053_0310_v1.1	(o24308\|top2_pea : 1259.0) DNA topoisomerase 2 (EC...	0.08	Orthogroups_2024-Update
MA_133272g0010	No alias	(at3g23890 : 1518.0) Encodes a topoisomerase II that is...	0.09	Orthogroups_2024-Update
MA_6634g0010	No alias	(o24308\|top2_pea : 1595.0) DNA topoisomerase 2 (EC...	0.1	Orthogroups_2024-Update
Mp3g13420.1	No alias	DNA topoisomerase (TOP2)	0.07	Orthogroups_2024-Update
PSME_00016559-RA	No alias	(o24308\|top2_pea : 1626.0) DNA topoisomerase 2 (EC...	0.03	Orthogroups_2024-Update
Pp1s33_203V6	No alias	dna topoisomerase ii	0.02	Orthogroups_2024-Update
Seita.1G284800.1	No alias	DNA topoisomerase *(TOP2)	0.03	Orthogroups_2024-Update
Sopen01g034420	No alias	DNA gyrase/topoisomerase IV, subunit A	0.07	Orthogroups_2024-Update
evm.model.contig_3477.2	No alias	(at3g23890 : 1176.0) Encodes a topoisomerase II that is...	0.09	Orthogroups_2024-Update
evm.model.tig00021432.55	No alias	(o24308\|top2_pea : 775.0) DNA topoisomerase 2 (EC...	0.07	Orthogroups_2024-Update
evm.model.tig00021433.1	No alias	(at3g23890 : 211.0) Encodes a topoisomerase II that is...	0.05	Orthogroups_2024-Update
evm.model.tig00021433.2	No alias	(at3g23890 : 475.0) Encodes a topoisomerase II that is...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	None	Extended
MF	GO:0003918	DNA topoisomerase type II (ATP-hydrolyzing) activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	IEA	InterProScan predictions
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008094	DNA-dependent ATPase activity	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016887	ATPase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
MF	GO:0061505	DNA topoisomerase II activity	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	Predicted GO
CC	GO:0000796	condensin complex	IEP	Predicted GO
MF	GO:0003774	motor activity	IEP	Predicted GO
MF	GO:0003777	microtubule motor activity	IEP	Predicted GO
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0005088	Ras guanyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0005089	Rho guanyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
CC	GO:0005634	nucleus	IEP	Predicted GO
BP	GO:0006323	DNA packaging	IEP	Predicted GO
BP	GO:0006325	chromatin organization	IEP	Predicted GO
BP	GO:0006334	nucleosome assembly	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0006928	movement of cell or subcellular component	IEP	Predicted GO
BP	GO:0007017	microtubule-based process	IEP	Predicted GO
BP	GO:0007018	microtubule-based movement	IEP	Predicted GO
BP	GO:0007076	mitotic chromosome condensation	IEP	Predicted GO
MF	GO:0008017	microtubule binding	IEP	Predicted GO
MF	GO:0008092	cytoskeletal protein binding	IEP	Predicted GO
MF	GO:0015631	tubulin binding	IEP	Predicted GO
MF	GO:0017048	Rho GTPase binding	IEP	Predicted GO
BP	GO:0022607	cellular component assembly	IEP	Predicted GO
BP	GO:0030261	chromosome condensation	IEP	Predicted GO
CC	GO:0032993	protein-DNA complex	IEP	Predicted GO
MF	GO:0034061	DNA polymerase activity	IEP	Predicted GO
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Predicted GO
BP	GO:0034728	nucleosome organization	IEP	Predicted GO
BP	GO:0043933	protein-containing complex subunit organization	IEP	Predicted GO
CC	GO:0044427	chromosomal part	IEP	Predicted GO
CC	GO:0044815	DNA packaging complex	IEP	Predicted GO
BP	GO:0065003	protein-containing complex assembly	IEP	Predicted GO
BP	GO:0065004	protein-DNA complex assembly	IEP	Predicted GO
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predicted GO
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Predicted GO
BP	GO:1903047	mitotic cell cycle process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR006171	TOPRIM_domain	449	547
IPR013506	Topo_IIA_bsu_dom2	278	416
IPR031660	TOPRIM_C	563	690
IPR002205	Topo_IIA_A/C	693	1152
IPR003594	HATPase_C	72	217

External Links

No external refs found!

Solyc01g087500

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation