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  5. LOC_Os06g35730

LOC_Os06g35730


Description : ribosomal protein L5, putative, expressed


Gene families : OG_42_0001107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os06g35730
Cluster HCCA clusters: cluster_0072

Target Alias Description ECC score Gene Family Method Actions
A4A49_37402 No alias 60s ribosomal protein l11-2 0.03 Orthogroups_2024-Update
A4A49_61288 No alias 60s ribosomal protein l11-2 0.02 Orthogroups_2024-Update
At3g58700 No alias 60S ribosomal protein L11-2... 0.03 Orthogroups_2024-Update
Bradi2g32640 No alias ribosomal protein large subunit 16A 0.04 Orthogroups_2024-Update
Bradi3g09030 No alias ribosomal protein large subunit 16A 0.03 Orthogroups_2024-Update
Brara.A00981.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.F03663.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Brara.I04045.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.K00428.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Cre01.g027000 No alias ribosomal protein large subunit 16A 0.05 Orthogroups_2024-Update
Glyma.06G323000 No alias Ribosomal L5P family protein 0.05 Orthogroups_2024-Update
Glyma.12G131600 No alias Ribosomal L5P family protein 0.04 Orthogroups_2024-Update
Glyma.12G131700 No alias Ribosomal L5P family protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G026060.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
PSME_00002051-RA No alias (at5g45775 : 331.0) Ribosomal L5P family protein;... 0.02 Orthogroups_2024-Update
Pp1s239_32V6 No alias 60s ribosomal protein 0.03 Orthogroups_2024-Update
Pp1s265_52V6 No alias 60s ribosomal protein 0.03 Orthogroups_2024-Update
Seita.5G144900.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Sobic.003G025200.2 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Sobic.004G103800.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Sobic.004G104100.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Sobic.004G104300.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Solyc02g086240 No alias Ribosomal L5P family protein (AHRD V3.3 *** AT5G45775.2) 0.03 Orthogroups_2024-Update
Solyc12g010930 No alias Ribosomal L5P family protein (AHRD V3.3 *** AT5G45775.2) 0.03 Orthogroups_2024-Update
Sopen10g003850 No alias ribosomal L5P family C-terminus 0.03 Orthogroups_2024-Update
Sopen12g006290 No alias ribosomal L5P family C-terminus 0.04 Orthogroups_2024-Update
evm.model.contig_4456.22 No alias (p46287|rl11_medsa : 230.0) 60S ribosomal protein L11... 0.05 Orthogroups_2024-Update
evm.model.tig00020610.38 No alias (at2g42740 : 221.0) encodes a cytosolic ribosomal... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005787 signal peptidase complex IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR031310 Ribosomal_L5_N 9 62
IPR031309 Ribosomal_L5_C 66 164
No external refs found!