LOC_Os06g37340


Description : retrotransposon protein, putative, unclassified, expressed


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os06g37340
Cluster HCCA clusters: cluster_0002

Target Alias Description ECC score Gene Family Method Actions
Cre01.g006402 No alias Function unknown 0.01 Orthogroups_2024-Update
LOC_Os10g13960 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Sopen08g012730 No alias Retroviral aspartyl protease 0.02 Orthogroups_2024-Update
Sopen11g019830 No alias Integrase core domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0005319 lipid transporter activity IEP Predicted GO
BP GO:0006869 lipid transport IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
BP GO:0120009 intermembrane lipid transfer IEP Predicted GO
MF GO:0120013 intermembrane lipid transfer activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 766 871
IPR000477 RT_dom 355 515
No external refs found!