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  5. Solyc01g087670

Solyc01g087670


Description : Transducin/WD40 repeat protein (AHRD V3.3 *** A0A072UCU5_MEDTR)


Gene families : OG_42_0007155 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007155_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g087670
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
78691 No alias transducin family protein / WD-40 repeat family protein 0.04 Orthogroups_2024-Update
At4g04940 No alias Putative WD-repeat membrane protein... 0.08 Orthogroups_2024-Update
Bradi1g30580 No alias transducin family protein / WD-40 repeat family protein 0.07 Orthogroups_2024-Update
Brara.C02742.1 No alias SSU processome assembly factor *(UTP21) 0.07 Orthogroups_2024-Update
Cre10.g466250 No alias transducin family protein / WD-40 repeat family protein 0.08 Orthogroups_2024-Update
HORVU7Hr1G115460.4 No alias SSU processome assembly factor *(UTP21) 0.04 Orthogroups_2024-Update
LOC_Os06g43690 No alias WD repeat-containing protein, putative, expressed 0.05 Orthogroups_2024-Update
Mp3g13780.1 No alias SSU processome assembly factor (UTP21) 0.04 Orthogroups_2024-Update
Potri.006G078900 No alias transducin family protein / WD-40 repeat family protein 0.1 Orthogroups_2024-Update
Potri.018G148132 No alias transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
Pp1s207_37V6 No alias mgc53182 protein 0.05 Orthogroups_2024-Update
Seita.4G201000.1 No alias SSU processome assembly factor *(UTP21) 0.09 Orthogroups_2024-Update
Sobic.010G205900.1 No alias SSU processome assembly factor *(UTP21) 0.07 Orthogroups_2024-Update
Sopen01g034630 No alias Utp21 specific WD40 associated putative domain 0.05 Orthogroups_2024-Update
evm.model.contig_493.12 No alias (at4g04940 : 260.0) transducin family protein / WD-40... 0.03 Orthogroups_2024-Update
evm.model.tig00021348.51 No alias (at4g04940 : 484.0) transducin family protein / WD-40... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
BP GO:0006364 rRNA processing IEA InterProScan predictions
CC GO:0032040 small-subunit processome IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 548 585
IPR007319 SSU_processome_Utp21 684 903
IPR024977 Apc4_WD40_dom 190 276
No external refs found!