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  5. LOC_Os06g49100

LOC_Os06g49100


Description : retrotransposon protein, putative, unclassified, expressed


Gene families : OG_42_0000323 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000323_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os06g49100
Cluster HCCA clusters: cluster_0031

Target Alias Description ECC score Gene Family Method Actions
At1g62440 No alias Leucine-rich repeat extensin-like protein 2... 0.02 Orthogroups_2024-Update
Bradi1g55720 No alias Leucine-rich repeat (LRR) family protein 0.03 Orthogroups_2024-Update
Brara.H00300.1 No alias LRR-domain extensin 0.02 Orthogroups_2024-Update
GRMZM2G300969 No alias Leucine-rich repeat (LRR) family protein 0.02 Orthogroups_2024-Update
Glyma.05G232000 No alias Leucine-rich repeat (LRR) family protein 0.02 Orthogroups_2024-Update
HORVU6Hr1G016710.2 No alias LRR-domain extensin 0.03 Orthogroups_2024-Update
MA_100985g0010 No alias (at4g13340 : 496.0) Leucine-rich repeat (LRR) family... 0.04 Orthogroups_2024-Update
Potri.006G162300 No alias Leucine-rich repeat (LRR) family protein 0.02 Orthogroups_2024-Update
Seita.1G092900.1 No alias LRR-domain extensin 0.03 Orthogroups_2024-Update
Seita.4G271100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G205600.1 No alias LRR-domain extensin 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 116 174
No external refs found!