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  5. LOC_Os07g28210

LOC_Os07g28210


Description : retrotransposon protein, putative, unclassified, expressed


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os07g28210
Cluster HCCA clusters: cluster_0084

Target Alias Description ECC score Gene Family Method Actions
PSME_00024374-RA No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
Sopen03g019370 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen05g023950 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen11g021510 No alias Retroviral aspartyl protease 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Predicted GO
CC GO:0000808 origin recognition complex IEP Predicted GO
MF GO:0005244 voltage-gated ion channel activity IEP Predicted GO
MF GO:0005247 voltage-gated chloride channel activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
CC GO:0005664 nuclear origin of replication recognition complex IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006743 ubiquinone metabolic process IEP Predicted GO
BP GO:0006744 ubiquinone biosynthetic process IEP Predicted GO
BP GO:0006821 chloride transport IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008308 voltage-gated anion channel activity IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0022832 voltage-gated channel activity IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
CC GO:0031262 Ndc80 complex IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042180 cellular ketone metabolic process IEP Predicted GO
BP GO:0042181 ketone biosynthetic process IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
BP GO:0070070 proton-transporting V-type ATPase complex assembly IEP Predicted GO
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Predicted GO
BP GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly IEP Predicted GO
BP GO:1901661 quinone metabolic process IEP Predicted GO
BP GO:1901663 quinone biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 172 264
IPR000477 RT_dom 617 777
IPR001584 Integrase_cat-core 1083 1181
No external refs found!