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Description : 60S acidic ribosomal protein, putative, expressed
Gene families : OG_42_0002306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002306_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza release: LOC_Os08g02340 | |
| Cluster | HCCA clusters: cluster_0084 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 133023 | No alias | 60S acidic ribosomal protein family | 0.04 | Orthogroups_2024-Update | |
| At1g01100 | No alias | 60S acidic ribosomal protein P1-1... | 0.02 | Orthogroups_2024-Update | |
| At5g47700 | No alias | 60S acidic ribosomal protein P1-3... | 0.02 | Orthogroups_2024-Update | |
| Brara.C02860.1 | No alias | component *(RPP1) of large ribosomal-subunit (LSU) proteome | 0.06 | Orthogroups_2024-Update | |
| Brara.I00080.1 | No alias | component *(RPP1) of large ribosomal-subunit (LSU) proteome | 0.05 | Orthogroups_2024-Update | |
| Brara.I05590.1 | No alias | component *(RPP1) of large ribosomal-subunit (LSU) proteome | 0.02 | Orthogroups_2024-Update | |
| Brara.J00070.1 | No alias | component *(RPP1) of large ribosomal-subunit (LSU) proteome | 0.06 | Orthogroups_2024-Update | |
| Cre17.g738300 | No alias | 60S acidic ribosomal protein family | 0.06 | Orthogroups_2024-Update | |
| Glyma.03G260900 | No alias | 60S acidic ribosomal protein family | 0.05 | Orthogroups_2024-Update | |
| Glyma.04G229000 | No alias | 60S acidic ribosomal protein family | 0.04 | Orthogroups_2024-Update | |
| Glyma.06G135800 | No alias | 60S acidic ribosomal protein family | 0.03 | Orthogroups_2024-Update | |
| Glyma.19G259800 | No alias | 60S acidic ribosomal protein family | 0.04 | Orthogroups_2024-Update | |
| HORVU7Hr1G075360.2 | No alias | component *(RPP1) of large ribosomal-subunit (LSU) proteome | 0.05 | Orthogroups_2024-Update | |
| Kfl01021_0050 | kfl01021_0050_v1.1 | (p29763|rla1_chlre : 92.0) 60S acidic ribosomal protein... | 0.02 | Orthogroups_2024-Update | |
| Mp6g11950.1 | No alias | component RPP1 of LSU proteome component | 0.05 | Orthogroups_2024-Update | |
| PSME_00011424-RA | No alias | (at5g24510 : 97.1) 60S acidic ribosomal protein family;... | 0.05 | Orthogroups_2024-Update | |
| Potri.012G021700 | No alias | 60S acidic ribosomal protein family | 0.03 | Orthogroups_2024-Update | |
| Potri.015G004700 | No alias | 60S acidic ribosomal protein family | 0.02 | Orthogroups_2024-Update | |
| Pp1s134_153V6 | No alias | 60s acidic ribosomal protein | 0.03 | Orthogroups_2024-Update | |
| Pp1s152_152V6 | No alias | 60s acidic ribosomal protein | 0.05 | Orthogroups_2024-Update | |
| Pp1s28_131V6 | No alias | 60s acidic ribosomal protein | 0.05 | Orthogroups_2024-Update | |
| Pp1s68_115V6 | No alias | 60s acidic ribosomal protein p1 | 0.06 | Orthogroups_2024-Update | |
| Sobic.007G018300.1 | No alias | component *(RPP1) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
| Solyc01g104370 | No alias | 60S acidic ribosomal protein P1 (AHRD V3.3 *** A0A199VEQ5_ANACO) | 0.06 | Orthogroups_2024-Update | |
| Sopen01g002170 | No alias | 60s Acidic ribosomal protein | 0.04 | Orthogroups_2024-Update | |
| Sopen01g046810 | No alias | 60s Acidic ribosomal protein | 0.05 | Orthogroups_2024-Update | |
| evm.model.contig_2051.2 | No alias | no hits & (original description: no original description) | 0.04 | Orthogroups_2024-Update | |
| evm.model.contig_4546.2 | No alias | no hits & (original description: no original description) | 0.01 | Orthogroups_2024-Update | |
| evm.model.tig00000342.4 | No alias | (p52855|rla1_maize : 85.9) 60S acidic ribosomal protein... | 0.01 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000276 | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) | IEP | Predicted GO |
| MF | GO:0000702 | oxidized base lesion DNA N-glycosylase activity | IEP | Predicted GO |
| MF | GO:0003684 | damaged DNA binding | IEP | Predicted GO |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0004576 | oligosaccharyl transferase activity | IEP | Predicted GO |
| MF | GO:0004579 | dolichyl-diphosphooligosaccharide-protein glycotransferase activity | IEP | Predicted GO |
| MF | GO:0004664 | prephenate dehydratase activity | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| CC | GO:0005575 | cellular_component | IEP | Predicted GO |
| CC | GO:0005622 | intracellular | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| BP | GO:0006284 | base-excision repair | IEP | Predicted GO |
| BP | GO:0006289 | nucleotide-excision repair | IEP | Predicted GO |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006413 | translational initiation | IEP | Predicted GO |
| BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
| BP | GO:0006558 | L-phenylalanine metabolic process | IEP | Predicted GO |
| BP | GO:0006835 | dicarboxylic acid transport | IEP | Predicted GO |
| BP | GO:0006888 | ER to Golgi vesicle-mediated transport | IEP | Predicted GO |
| BP | GO:0008104 | protein localization | IEP | Predicted GO |
| CC | GO:0008250 | oligosaccharyltransferase complex | IEP | Predicted GO |
| MF | GO:0008534 | oxidized purine nucleobase lesion DNA N-glycosylase activity | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0009094 | L-phenylalanine biosynthetic process | IEP | Predicted GO |
| BP | GO:0009095 | aromatic amino acid family biosynthetic process, prephenate pathway | IEP | Predicted GO |
| BP | GO:0015031 | protein transport | IEP | Predicted GO |
| BP | GO:0015711 | organic anion transport | IEP | Predicted GO |
| BP | GO:0015740 | C4-dicarboxylate transport | IEP | Predicted GO |
| BP | GO:0015743 | malate transport | IEP | Predicted GO |
| BP | GO:0015833 | peptide transport | IEP | Predicted GO |
| BP | GO:0015849 | organic acid transport | IEP | Predicted GO |
| CC | GO:0016272 | prefoldin complex | IEP | Predicted GO |
| BP | GO:0017144 | drug metabolic process | IEP | Predicted GO |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | Predicted GO |
| MF | GO:0019104 | DNA N-glycosylase activity | IEP | Predicted GO |
| MF | GO:0019208 | phosphatase regulator activity | IEP | Predicted GO |
| MF | GO:0019211 | phosphatase activator activity | IEP | Predicted GO |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Predicted GO |
| MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
| CC | GO:0030120 | vesicle coat | IEP | Predicted GO |
| CC | GO:0030127 | COPII vesicle coat | IEP | Predicted GO |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Predicted GO |
| CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
| BP | GO:0033036 | macromolecule localization | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Predicted GO |
| BP | GO:0042886 | amide transport | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044422 | organelle part | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| CC | GO:0044446 | intracellular organelle part | IEP | Predicted GO |
| CC | GO:0044455 | mitochondrial membrane part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| BP | GO:0045184 | establishment of protein localization | IEP | Predicted GO |
| CC | GO:0045263 | proton-transporting ATP synthase complex, coupling factor F(o) | IEP | Predicted GO |
| BP | GO:0046942 | carboxylic acid transport | IEP | Predicted GO |
| MF | GO:0051087 | chaperone binding | IEP | Predicted GO |
| BP | GO:0070070 | proton-transporting V-type ATPase complex assembly | IEP | Predicted GO |
| BP | GO:0070071 | proton-transporting two-sector ATPase complex assembly | IEP | Predicted GO |
| BP | GO:0070072 | vacuolar proton-transporting V-type ATPase complex assembly | IEP | Predicted GO |
| BP | GO:0071702 | organic substance transport | IEP | Predicted GO |
| BP | GO:0071705 | nitrogen compound transport | IEP | Predicted GO |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Predicted GO |
| CC | GO:0098796 | membrane protein complex | IEP | Predicted GO |
| CC | GO:0098798 | mitochondrial protein complex | IEP | Predicted GO |
| CC | GO:0098800 | inner mitochondrial membrane protein complex | IEP | Predicted GO |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
| BP | GO:1902221 | erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process | IEP | Predicted GO |
| BP | GO:1902223 | erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |