LOC_Os08g02400

Description : 40S ribosomal protein S13, putative, expressed

Gene families : OG_42_0001410 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001410_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os08g02400
Cluster	HCCA clusters: cluster_0084

Target	Alias	Description	ECC score	Gene Family Method
A4A49_64599	No alias	40s ribosomal protein s13	0.02	Orthogroups_2024-Update
Bradi3g13810	No alias	ribosomal protein S13A	0.03	Orthogroups_2024-Update
Brara.E00496.1	No alias	component *(uS15) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Brara.G01898.1	No alias	component *(uS15) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Brara.I04191.1	No alias	component *(uS15) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Cre07.g331900	No alias	ribosomal protein S13A	0.02	Orthogroups_2024-Update
Glyma.05G052300	No alias	ribosomal protein S13A	0.04	Orthogroups_2024-Update
Glyma.05G052600	No alias	ribosomal protein S13A	0.04	Orthogroups_2024-Update
HORVU7Hr1G075250.1	No alias	component *(uS15) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
MA_141232g0010	No alias	(p62302\|rs13_soybn : 291.0) 40S ribosomal protein S13 -...	0.03	Orthogroups_2024-Update
Mp4g03410.1	No alias	component RPS13 of SSU proteome	0.03	Orthogroups_2024-Update
PSME_00021950-RA	No alias	(p62302\|rs13_soybn : 223.0) 40S ribosomal protein S13 -...	0.06	Orthogroups_2024-Update
Potri.002G146800	No alias	Ribosomal protein S13/S15	0.03	Orthogroups_2024-Update
Pp1s39_130V6	No alias	40s ribosomal protein s13	0.06	Orthogroups_2024-Update
Pp1s97_272V6	No alias	40s ribosomal protein s13	0.04	Orthogroups_2024-Update
Seita.6G084900.1	No alias	component *(uS15) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Sobic.007G019000.1	No alias	component *(uS15) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Sobic.007G019400.1	No alias	component *(uS15) of small ribosomal-subunit (SSU) proteome	0.02	Orthogroups_2024-Update
Solyc05g051000	No alias	40S ribosomal protein S13 (AHRD V3.3 *** RS13_SOYBN)	0.03	Orthogroups_2024-Update
Solyc11g072260	No alias	40S ribosomal protein S13 (AHRD V3.3 *** RS13_SOYBN)	0.03	Orthogroups_2024-Update
Sopen03g023340	No alias	Ribosomal S13/S15 N-terminal domain	0.03	Orthogroups_2024-Update
Sopen05g029470	No alias	Ribosomal S13/S15 N-terminal domain	0.05	Orthogroups_2024-Update
evm.model.contig_3443.6	No alias	(p62302\|rs13_soybn : 220.0) 40S ribosomal protein S13 -...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000045	autophagosome assembly	IEP	Predicted GO
CC	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Predicted GO
MF	GO:0000702	oxidized base lesion DNA N-glycosylase activity	IEP	Predicted GO
MF	GO:0003684	damaged DNA binding	IEP	Predicted GO
MF	GO:0003697	single-stranded DNA binding	IEP	Predicted GO
MF	GO:0004576	oligosaccharyl transferase activity	IEP	Predicted GO
MF	GO:0004579	dolichyl-diphosphooligosaccharide-protein glycotransferase activity	IEP	Predicted GO
CC	GO:0005739	mitochondrion	IEP	Predicted GO
CC	GO:0005759	mitochondrial matrix	IEP	Predicted GO
CC	GO:0005783	endoplasmic reticulum	IEP	Predicted GO
BP	GO:0006284	base-excision repair	IEP	Predicted GO
BP	GO:0006289	nucleotide-excision repair	IEP	Predicted GO
BP	GO:0006298	mismatch repair	IEP	Predicted GO
BP	GO:0006338	chromatin remodeling	IEP	Predicted GO
BP	GO:0006888	ER to Golgi vesicle-mediated transport	IEP	Predicted GO
BP	GO:0007033	vacuole organization	IEP	Predicted GO
CC	GO:0008250	oligosaccharyltransferase complex	IEP	Predicted GO
MF	GO:0008534	oxidized purine nucleobase lesion DNA N-glycosylase activity	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
BP	GO:0016043	cellular component organization	IEP	Predicted GO
MF	GO:0019104	DNA N-glycosylase activity	IEP	Predicted GO
BP	GO:0019725	cellular homeostasis	IEP	Predicted GO
BP	GO:0022607	cellular component assembly	IEP	Predicted GO
CC	GO:0030127	COPII vesicle coat	IEP	Predicted GO
MF	GO:0030983	mismatched DNA binding	IEP	Predicted GO
CC	GO:0031974	membrane-enclosed lumen	IEP	Predicted GO
BP	GO:0034728	nucleosome organization	IEP	Predicted GO
BP	GO:0042592	homeostatic process	IEP	Predicted GO
BP	GO:0043044	ATP-dependent chromatin remodeling	IEP	Predicted GO
CC	GO:0043227	membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043233	organelle lumen	IEP	Predicted GO
BP	GO:0043486	histone exchange	IEP	Predicted GO
BP	GO:0043933	protein-containing complex subunit organization	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
CC	GO:0044422	organelle part	IEP	Predicted GO
CC	GO:0044429	mitochondrial part	IEP	Predicted GO
CC	GO:0044446	intracellular organelle part	IEP	Predicted GO
CC	GO:0044455	mitochondrial membrane part	IEP	Predicted GO
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Predicted GO
BP	GO:0045454	cell redox homeostasis	IEP	Predicted GO
MF	GO:0051087	chaperone binding	IEP	Predicted GO
BP	GO:0065008	regulation of biological quality	IEP	Predicted GO
CC	GO:0070013	intracellular organelle lumen	IEP	Predicted GO
BP	GO:0070925	organelle assembly	IEP	Predicted GO
CC	GO:0098796	membrane protein complex	IEP	Predicted GO
CC	GO:0098798	mitochondrial protein complex	IEP	Predicted GO
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Predicted GO
BP	GO:1905037	autophagosome organization	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR012606	Ribosomal_S13/S15_N	1	60
IPR000589	Ribosomal_S15	74	146

External Links

No external refs found!

LOC_Os08g02400

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation