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  5. LOC_Os08g02410

LOC_Os08g02410


Description : 40S ribosomal protein S13, putative, expressed


Gene families : OG_42_0001410 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001410_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os08g02410
Cluster HCCA clusters: cluster_0084

Target Alias Description ECC score Gene Family Method Actions
440805 No alias ribosomal protein S13A 0.02 Orthogroups_2024-Update
A4A49_64599 No alias 40s ribosomal protein s13 0.04 Orthogroups_2024-Update
Brara.D00142.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Brara.E00496.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Brara.G01898.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Brara.I04191.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Cre07.g331900 No alias ribosomal protein S13A 0.04 Orthogroups_2024-Update
Glyma.05G052300 No alias ribosomal protein S13A 0.05 Orthogroups_2024-Update
Glyma.05G052600 No alias ribosomal protein S13A 0.05 Orthogroups_2024-Update
HORVU7Hr1G075250.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Kfl00229_0020 kfl00229_0020_v1.1 (p62302|rs13_soybn : 266.0) 40S ribosomal protein S13 -... 0.02 Orthogroups_2024-Update
MA_141232g0010 No alias (p62302|rs13_soybn : 291.0) 40S ribosomal protein S13 -... 0.05 Orthogroups_2024-Update
Mp4g03410.1 No alias component RPS13 of SSU proteome 0.04 Orthogroups_2024-Update
PSME_00021950-RA No alias (p62302|rs13_soybn : 223.0) 40S ribosomal protein S13 -... 0.03 Orthogroups_2024-Update
Potri.002G146800 No alias Ribosomal protein S13/S15 0.02 Orthogroups_2024-Update
Pp1s39_130V6 No alias 40s ribosomal protein s13 0.04 Orthogroups_2024-Update
Pp1s97_272V6 No alias 40s ribosomal protein s13 0.03 Orthogroups_2024-Update
Seita.6G084900.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Seita.6G085100.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Sobic.002G348100.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Sobic.007G019000.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Sobic.007G019400.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Solyc05g051000 No alias 40S ribosomal protein S13 (AHRD V3.3 *** RS13_SOYBN) 0.03 Orthogroups_2024-Update
Solyc11g072260 No alias 40S ribosomal protein S13 (AHRD V3.3 *** RS13_SOYBN) 0.04 Orthogroups_2024-Update
Sopen03g023340 No alias Ribosomal S13/S15 N-terminal domain 0.03 Orthogroups_2024-Update
Sopen05g029470 No alias Ribosomal S13/S15 N-terminal domain 0.06 Orthogroups_2024-Update
evm.model.contig_3443.6 No alias (p62302|rs13_soybn : 220.0) 40S ribosomal protein S13 -... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000045 autophagosome assembly IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
CC GO:0005739 mitochondrion IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0007033 vacuole organization IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:1905037 autophagosome organization IEP Predicted GO
InterPro domains Description Start Stop
IPR012606 Ribosomal_S13/S15_N 1 60
IPR000589 Ribosomal_S15 74 146
No external refs found!