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  5. LOC_Os08g06090

LOC_Os08g06090


Description : zinc finger, C3HC4 type domain containing protein, expressed


Gene families : OG_42_0000206 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000206_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os08g06090
Cluster HCCA clusters: cluster_0066

Target Alias Description ECC score Gene Family Method Actions
A4A49_28369 No alias e3 ubiquitin-protein ligase rha1b 0.02 Orthogroups_2024-Update
A4A49_36602 No alias putative e3 ubiquitin-protein ligase xerico 0.02 Orthogroups_2024-Update
Bradi5g19220 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Brara.C02675.1 No alias E3 ubiquitin ligase *(BRH) 0.02 Orthogroups_2024-Update
Brara.D00103.1 No alias E3 ubiquitin ligase *(BRH) 0.03 Orthogroups_2024-Update
Brara.G01920.1 No alias E3 ubiquitin ligase *(BRH) 0.02 Orthogroups_2024-Update
Brara.I01375.1 No alias E3 ubiquitin ligase *(BRH) 0.03 Orthogroups_2024-Update
Cre01.g009101 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G134023 No alias brassinosteroid-responsive RING-H2 0.02 Orthogroups_2024-Update
Glyma.01G093800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G139700 No alias RING-H2 finger A2A 0.03 Orthogroups_2024-Update
Glyma.11G243400 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
MA_15246g0010 No alias (at2g04240 : 83.2) Encodes a small protein with an... 0.02 Orthogroups_2024-Update
MA_169947g0010 No alias (at3g61460 : 156.0) Encodes a novel ring finger protein... 0.03 Orthogroups_2024-Update
MA_447489g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Potri.010G133700 No alias brassinosteroid-responsive RING-H2 0.03 Orthogroups_2024-Update
Seita.1G273100.1 No alias E3 ubiquitin ligase *(BRH) 0.03 Orthogroups_2024-Update
Sobic.004G280900.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.006G189700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc05g018760 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
MF GO:0008373 sialyltransferase activity IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0016125 sterol metabolic process IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016863 intramolecular oxidoreductase activity, transposing C=C bonds IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
MF GO:0047750 cholestenol delta-isomerase activity IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0051259 protein complex oligomerization IEP Predicted GO
BP GO:0051260 protein homooligomerization IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1901615 organic hydroxy compound metabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 106 150
No external refs found!