LOC_Os08g43110


Description : retrotransposon protein, putative, unclassified, expressed


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os08g43110
Cluster HCCA clusters: cluster_0054

Target Alias Description ECC score Gene Family Method Actions
131670 No alias cysteine-rich RLK (RECEPTOR-like protein kinase) 8 0.02 Orthogroups_2024-Update
Solyc09g015410 No alias No description available 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
Type GO Term Name Evidence Source
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR013103 RVT_2 953 1194
IPR001584 Integrase_cat-core 496 607
IPR025724 GAG-pre-integrase_dom 420 483
No external refs found!