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  5. LOC_Os10g22160

LOC_Os10g22160


Description : retrotransposon, putative, centromere-specific, expressed


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os10g22160
Cluster HCCA clusters: cluster_0115

Target Alias Description ECC score Gene Family Method Actions
HORVU6Hr1G052870.1 No alias Unknown function 0.02 Orthogroups_2024-Update
PSME_00024374-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Potri.001G260400 No alias Function unknown 0.03 Orthogroups_2024-Update
Solyc09g059000 No alias No description available 0.02 Orthogroups_2024-Update
Solyc10g036800 No alias No description available 0.02 Orthogroups_2024-Update
Solyc10g054430 No alias No description available 0.03 Orthogroups_2024-Update
Solyc12g019380 No alias No description available 0.02 Orthogroups_2024-Update
Sopen01g024770 No alias hypothetical protein 0.02 Orthogroups_2024-Update
Sopen09g016630 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen10g020660 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen12g012750 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen12g019980 No alias Integrase core domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008146 sulfotransferase activity IEP Predicted GO
BP GO:0009605 response to external stimulus IEP Predicted GO
BP GO:0009607 response to biotic stimulus IEP Predicted GO
BP GO:0009620 response to fungus IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Predicted GO
BP GO:0043207 response to external biotic stimulus IEP Predicted GO
BP GO:0050832 defense response to fungus IEP Predicted GO
BP GO:0051704 multi-organism process IEP Predicted GO
BP GO:0051707 response to other organism IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
BP GO:0098542 defense response to other organism IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!