LOC_Os10g27190

Description : 40S ribosomal protein S17, putative, expressed

Gene families : OG_42_0002664 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002664_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os10g27190
Cluster	HCCA clusters: cluster_0084

Target	Alias	Description	ECC score	Gene Family Method
A4A49_19728	No alias	40s ribosomal protein s17	0.02	Orthogroups_2024-Update
At5g04800	No alias	40S ribosomal protein S17-4...	0.05	Orthogroups_2024-Update
Bradi3g29060	No alias	Ribosomal S17 family protein	0.02	Orthogroups_2024-Update
Brara.B00154.1	No alias	component *(eS17) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Brara.C00178.1	No alias	component *(eS17) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Brara.J02711.1	No alias	component *(eS17) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Cre12.g498250	No alias	Ribosomal S17 family protein	0.05	Orthogroups_2024-Update
Glyma.10G076400	No alias	Ribosomal S17 family protein	0.05	Orthogroups_2024-Update
Glyma.20G017700	No alias	Ribosomal S17 family protein	0.03	Orthogroups_2024-Update
HORVU1Hr1G042220.1	No alias	component *(eS17) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
LOC_Os03g01900	No alias	40S ribosomal protein S17, putative, expressed	0.03	Orthogroups_2024-Update
MA_184894g0010	No alias	(at5g04800 : 212.0) Ribosomal S17 family protein;...	0.03	Orthogroups_2024-Update
Mp8g18950.1	No alias	component RPS17 of SSU proteome	0.04	Orthogroups_2024-Update
Pp1s2_290V6	No alias	40s ribosomal protein	0.02	Orthogroups_2024-Update
Pp1s39_287V6	No alias	40s ribosomal protein	0.04	Orthogroups_2024-Update
Pp1s76_75V6	No alias	40s ribosomal protein	0.03	Orthogroups_2024-Update
Seita.9G218400.1	No alias	component *(eS17) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Seita.9G497100.1	No alias	component *(eS17) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Sobic.010G076400.1	No alias	component *(eS17) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Solyc05g055230	No alias	40S ribosomal protein S17 (AHRD V3.3 *** RS17_SOLLC)	0.06	Orthogroups_2024-Update
Solyc11g006690	No alias	40S ribosomal protein S17 (AHRD V3.3 *** RS17_SOLLC)	0.07	Orthogroups_2024-Update
Sopen05g033670	No alias	Ribosomal S17	0.08	Orthogroups_2024-Update
Sopen10g032640	No alias	Ribosomal S17	0.06	Orthogroups_2024-Update
Sopen11g002620	No alias	Ribosomal S17	0.07	Orthogroups_2024-Update
evm.model.contig_2507.2	No alias	(at2g05220 : 160.0) Ribosomal S17 family protein;...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEP	Predicted GO
MF	GO:0000702	oxidized base lesion DNA N-glycosylase activity	IEP	Predicted GO
MF	GO:0003684	damaged DNA binding	IEP	Predicted GO
MF	GO:0004527	exonuclease activity	IEP	Predicted GO
MF	GO:0004576	oligosaccharyl transferase activity	IEP	Predicted GO
MF	GO:0004579	dolichyl-diphosphooligosaccharide-protein glycotransferase activity	IEP	Predicted GO
MF	GO:0005338	nucleotide-sugar transmembrane transporter activity	IEP	Predicted GO
BP	GO:0006284	base-excision repair	IEP	Predicted GO
BP	GO:0006289	nucleotide-excision repair	IEP	Predicted GO
BP	GO:0006338	chromatin remodeling	IEP	Predicted GO
BP	GO:0006413	translational initiation	IEP	Predicted GO
CC	GO:0008250	oligosaccharyltransferase complex	IEP	Predicted GO
MF	GO:0008408	3'-5' exonuclease activity	IEP	Predicted GO
MF	GO:0008534	oxidized purine nucleobase lesion DNA N-glycosylase activity	IEP	Predicted GO
MF	GO:0015165	pyrimidine nucleotide-sugar transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015780	nucleotide-sugar transmembrane transport	IEP	Predicted GO
BP	GO:0015931	nucleobase-containing compound transport	IEP	Predicted GO
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Predicted GO
MF	GO:0019104	DNA N-glycosylase activity	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0034728	nucleosome organization	IEP	Predicted GO
BP	GO:0043044	ATP-dependent chromatin remodeling	IEP	Predicted GO
BP	GO:0043486	histone exchange	IEP	Predicted GO
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predicted GO
BP	GO:0090481	pyrimidine nucleotide-sugar transmembrane transport	IEP	Predicted GO
CC	GO:0098588	bounding membrane of organelle	IEP	Predicted GO
BP	GO:1901264	carbohydrate derivative transport	IEP	Predicted GO
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001210	Ribosomal_S17e	1	121

External Links

No external refs found!

LOC_Os10g27190

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation