1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc08g082070

Solyc08g082070


Description : High mobility group family protein (AHRD V3.3 *** B9GL80_POPTR)


Gene families : OG_42_0004409 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004409_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc08g082070
Cluster HCCA clusters: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
73858 No alias HMG (high mobility group) box protein 0.11 Orthogroups_2024-Update
At4g11080 No alias High mobility group B protein 13... 0.03 Orthogroups_2024-Update
At4g23800 No alias High mobility group B protein 6... 0.06 Orthogroups_2024-Update
Brara.A01385.1 No alias DNA bending architectural protein *(HMG-B) 0.11 Orthogroups_2024-Update
Brara.I02554.1 No alias DNA bending architectural protein *(HMG-B) 0.22 Orthogroups_2024-Update
Glyma.05G215500 No alias HMG (high mobility group) box protein 0.07 Orthogroups_2024-Update
Glyma.08G021700 No alias HMG (high mobility group) box protein 0.2 Orthogroups_2024-Update
Kfl00059_0200 kfl00059_0200_v1.... (at4g23800 : 191.0) HMG (high mobility group) box... 0.1 Orthogroups_2024-Update
Mp2g12330.1 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.13 Orthogroups_2024-Update
PSME_00006829-RA No alias (at4g23800 : 271.0) HMG (high mobility group) box... 0.05 Orthogroups_2024-Update
Potri.001G093700 No alias HMG (high mobility group) box protein 0.09 Orthogroups_2024-Update
Pp1s2_357V6 No alias high mobility group family 0.02 Orthogroups_2024-Update
Sopen08g030360 No alias HMG (high mobility group) box 0.33 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
CC GO:0000775 chromosome, centromeric region IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
BP GO:0007059 chromosome segregation IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008373 sialyltransferase activity IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0045132 meiotic chromosome segregation IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
CC GO:0098687 chromosomal region IEP Predicted GO
BP GO:0098813 nuclear chromosome segregation IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1903046 meiotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 292 359
IPR009071 HMG_box_dom 420 488
IPR009071 HMG_box_dom 176 237
No external refs found!