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  5. LOC_Os10g36720

LOC_Os10g36720


Description : retrotransposon protein, putative, Ty1-copia subclass, expressed


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os10g36720
Cluster HCCA clusters: cluster_0009

Target Alias Description ECC score Gene Family Method Actions
A4A49_29852 No alias abc transporter c family member 2 0.02 Orthogroups_2024-Update
At3g20980 No alias Gag-Pol-related retrotransposon family protein... 0.02 Orthogroups_2024-Update
Solyc11g030660 No alias No description available 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 488 603
IPR025724 GAG-pre-integrase_dom 406 474
IPR013103 RVT_2 822 1061
IPR001878 Znf_CCHC 240 257
No external refs found!