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  5. LOC_Os10g37940

LOC_Os10g37940


Description : retrotransposon protein, putative, unclassified, expressed


Gene families : OG_42_0000180 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000180_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os10g37940
Cluster HCCA clusters: cluster_0140

Target Alias Description ECC score Gene Family Method Actions
Bradi1g33012 No alias Function unknown 0.03 Orthogroups_2024-Update
Bradi2g37573 No alias Ribonuclease H-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g27666 No alias Ribonuclease H-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os02g06750 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g18530 No alias expressed protein 0.03 Orthogroups_2024-Update
LOC_Os03g11430 No alias expressed protein 0.02 Orthogroups_2024-Update
LOC_Os03g62050 No alias conserved hypothetical protein 0.02 Orthogroups_2024-Update
LOC_Os10g29450 No alias expressed protein 0.03 Orthogroups_2024-Update
Seita.4G183000.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity IEP Predicted GO
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006575 cellular modified amino acid metabolic process IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0015939 pantothenate metabolic process IEP Predicted GO
BP GO:0015940 pantothenate biosynthetic process IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR026960 RVT-Znf 1408 1503
IPR000477 RT_dom 909 1150
IPR025558 DUF4283 163 303
No external refs found!