Description : nonsense-mediated mRNA decay protein 3, putative, expressed
Gene families : OG_42_0003734 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003734_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Oryza release: LOC_Os10g42320 | |
Cluster | HCCA clusters: cluster_0059 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cre15.g640250 | No alias | nonsense-mediated mRNA decay NMD3 family protein | 0.02 | Orthogroups_2024-Update | |
Potri.004G085700 | No alias | nonsense-mediated mRNA decay NMD3 family protein | 0.03 | Orthogroups_2024-Update | |
Pp1s100_108V6 | No alias | nonsense-mediated mrna decay protein | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0004222 | metalloendopeptidase activity | IEP | Predicted GO |
MF | GO:0004559 | alpha-mannosidase activity | IEP | Predicted GO |
MF | GO:0004616 | phosphogluconate dehydrogenase (decarboxylating) activity | IEP | Predicted GO |
MF | GO:0005215 | transporter activity | IEP | Predicted GO |
CC | GO:0005575 | cellular_component | IEP | Predicted GO |
CC | GO:0005634 | nucleus | IEP | Predicted GO |
CC | GO:0005759 | mitochondrial matrix | IEP | Predicted GO |
BP | GO:0005992 | trehalose biosynthetic process | IEP | Predicted GO |
BP | GO:0005996 | monosaccharide metabolic process | IEP | Predicted GO |
BP | GO:0006013 | mannose metabolic process | IEP | Predicted GO |
BP | GO:0006081 | cellular aldehyde metabolic process | IEP | Predicted GO |
BP | GO:0006098 | pentose-phosphate shunt | IEP | Predicted GO |
BP | GO:0006298 | mismatch repair | IEP | Predicted GO |
BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0006739 | NADP metabolic process | IEP | Predicted GO |
MF | GO:0015923 | mannosidase activity | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
MF | GO:0016597 | amino acid binding | IEP | Predicted GO |
MF | GO:0016743 | carboxyl- or carbamoyltransferase activity | IEP | Predicted GO |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Predicted GO |
BP | GO:0019318 | hexose metabolic process | IEP | Predicted GO |
BP | GO:0019682 | glyceraldehyde-3-phosphate metabolic process | IEP | Predicted GO |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
MF | GO:0022857 | transmembrane transporter activity | IEP | Predicted GO |
CC | GO:0030684 | preribosome | IEP | Predicted GO |
MF | GO:0030983 | mismatched DNA binding | IEP | Predicted GO |
MF | GO:0031406 | carboxylic acid binding | IEP | Predicted GO |
CC | GO:0031974 | membrane-enclosed lumen | IEP | Predicted GO |
CC | GO:0032040 | small-subunit processome | IEP | Predicted GO |
MF | GO:0034061 | DNA polymerase activity | IEP | Predicted GO |
BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
MF | GO:0043177 | organic acid binding | IEP | Predicted GO |
CC | GO:0043227 | membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043233 | organelle lumen | IEP | Predicted GO |
BP | GO:0044281 | small molecule metabolic process | IEP | Predicted GO |
CC | GO:0044429 | mitochondrial part | IEP | Predicted GO |
BP | GO:0051156 | glucose 6-phosphate metabolic process | IEP | Predicted GO |
BP | GO:0055085 | transmembrane transport | IEP | Predicted GO |
MF | GO:0061630 | ubiquitin protein ligase activity | IEP | Predicted GO |
MF | GO:0061659 | ubiquitin-like protein ligase activity | IEP | Predicted GO |
CC | GO:0070013 | intracellular organelle lumen | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007064 | Nmd3_N | 26 | 258 |
No external refs found! |