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  5. LOC_Os11g05730

LOC_Os11g05730


Description : histone H3, putative, expressed


Gene families : OG_42_0000090 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000090_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os11g05730
Cluster HCCA clusters: cluster_0001

Target Alias Description ECC score Gene Family Method Actions
438193 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
78992 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
At1g19890 No alias MGH3 [Source:UniProtKB/TrEMBL;Acc:A0A178WKL2] 0.03 Orthogroups_2024-Update
At5g65350 No alias Histone H3-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKQ3] 0.01 Orthogroups_2024-Update
GRMZM2G171387 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G179005 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
HORVU6Hr1G029190.1 No alias histone *(H3) 0.02 Orthogroups_2024-Update
HORVU6Hr1G029200.1 No alias histone *(H3) 0.02 Orthogroups_2024-Update
HORVU7Hr1G033030.1 No alias histone *(H3) 0.02 Orthogroups_2024-Update
MA_350032g0010 No alias (at5g10980 : 266.0) Histone superfamily protein;... 0.02 Orthogroups_2024-Update
Potri.002G026800 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Sobic.001G284800.1 No alias histone *(H3) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 132
No external refs found!