LOC_Os11g10000

Description : mTERF family protein, expressed

Gene families : OG_42_0000078 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000078_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os11g10000
Cluster	HCCA clusters: cluster_0068

Target	Alias	Description	ECC score	Gene Family Method
At1g62010	No alias	F8K4.20 protein [Source:UniProtKB/TrEMBL;Acc:O80705]	0.02	Orthogroups_2024-Update
At1g62150	No alias	Mitochondrial transcription termination factor family...	0.03	Orthogroups_2024-Update
Bradi1g45338	No alias	Mitochondrial transcription termination factor family protein	0.05	Orthogroups_2024-Update
Brara.C04011.1	No alias	mTERF-type transcription factor	0.02	Orthogroups_2024-Update
Glyma.16G085500	No alias	Mitochondrial transcription termination factor family protein	0.02	Orthogroups_2024-Update
HORVU1Hr1G067320.1	No alias	mTERF-type transcription factor	0.02	Orthogroups_2024-Update
Mp1g21970.1	No alias	transcription factor (mTERF)	0.02	Orthogroups_2024-Update
PSME_00000445-RA	No alias	(at5g64950 : 86.7) Mitochondrial transcription...	0.02	Orthogroups_2024-Update
PSME_00020293-RA	No alias	(at5g23930 : 110.0) Mitochondrial transcription...	0.02	Orthogroups_2024-Update
PSME_00030142-RA	No alias	(at5g64950 : 89.4) Mitochondrial transcription...	0.03	Orthogroups_2024-Update
PSME_00056135-RA	No alias	(at1g79220 : 100.0) Mitochondrial transcription...	0.02	Orthogroups_2024-Update
PSME_00056194-RA	No alias	(at5g64950 : 106.0) Mitochondrial transcription...	0.01	Orthogroups_2024-Update
Pp1s219_66V6	No alias	No description available	0.02	Orthogroups_2024-Update
Seita.4G092000.1	No alias	mTERF-type transcription factor	0.01	Orthogroups_2024-Update
Seita.4G094400.1	No alias	mTERF-type transcription factor	0.01	Orthogroups_2024-Update
Seita.4G095900.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
Seita.4G096000.1	No alias	mTERF-type transcription factor	0.01	Orthogroups_2024-Update
Seita.4G144900.1	No alias	mTERF-type transcription factor	0.02	Orthogroups_2024-Update
Seita.5G384400.1	No alias	mTERF-type transcription factor	0.04	Orthogroups_2024-Update
Sobic.001G029000.1	No alias	mTERF-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.002G179800.1	No alias	mTERF-type transcription factor	0.01	Orthogroups_2024-Update
Sobic.007G114700.3	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.009G131550.1	No alias	mTERF-type transcription factor	0.02	Orthogroups_2024-Update
evm.model.tig00001416.3	No alias	no hits & (original description: no original description)	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Predicted GO
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Predicted GO
MF	GO:0004525	ribonuclease III activity	IEP	Predicted GO
MF	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	IEP	Predicted GO
MF	GO:0004645	phosphorylase activity	IEP	Predicted GO
MF	GO:0004749	ribose phosphate diphosphokinase activity	IEP	Predicted GO
MF	GO:0005542	folic acid binding	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
BP	GO:0006081	cellular aldehyde metabolic process	IEP	Predicted GO
BP	GO:0006098	pentose-phosphate shunt	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006739	NADP metabolic process	IEP	Predicted GO
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Predicted GO
BP	GO:0006766	vitamin metabolic process	IEP	Predicted GO
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Predicted GO
BP	GO:0006772	thiamine metabolic process	IEP	Predicted GO
MF	GO:0008184	glycogen phosphorylase activity	IEP	Predicted GO
MF	GO:0008236	serine-type peptidase activity	IEP	Predicted GO
BP	GO:0009058	biosynthetic process	IEP	Predicted GO
BP	GO:0009110	vitamin biosynthetic process	IEP	Predicted GO
BP	GO:0009117	nucleotide metabolic process	IEP	Predicted GO
BP	GO:0009228	thiamine biosynthetic process	IEP	Predicted GO
MF	GO:0009982	pseudouridine synthase activity	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	Predicted GO
MF	GO:0016778	diphosphotransferase activity	IEP	Predicted GO
MF	GO:0016853	isomerase activity	IEP	Predicted GO
MF	GO:0016866	intramolecular transferase activity	IEP	Predicted GO
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Predicted GO
MF	GO:0017171	serine hydrolase activity	IEP	Predicted GO
BP	GO:0018130	heterocycle biosynthetic process	IEP	Predicted GO
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Predicted GO
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	Predicted GO
MF	GO:0031406	carboxylic acid binding	IEP	Predicted GO
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	Predicted GO
MF	GO:0033218	amide binding	IEP	Predicted GO
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Predicted GO
BP	GO:0042723	thiamine-containing compound metabolic process	IEP	Predicted GO
BP	GO:0042724	thiamine-containing compound biosynthetic process	IEP	Predicted GO
MF	GO:0043177	organic acid binding	IEP	Predicted GO
BP	GO:0044249	cellular biosynthetic process	IEP	Predicted GO
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Predicted GO
BP	GO:0044272	sulfur compound biosynthetic process	IEP	Predicted GO
BP	GO:0044281	small molecule metabolic process	IEP	Predicted GO
MF	GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	IEP	Predicted GO
BP	GO:0051156	glucose 6-phosphate metabolic process	IEP	Predicted GO
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Predicted GO
MF	GO:0072341	modified amino acid binding	IEP	Predicted GO
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Predicted GO
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Predicted GO
BP	GO:1901576	organic substance biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003690	MTERF	262	411

External Links

No external refs found!

LOC_Os11g10000

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation