1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc09g007430

Solyc09g007430


Description : Single-stranded DNA binding protein (AHRD V3.3 *** D7KGI0_ARALL)


Gene families : OG_42_0002038 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002038_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc09g007430
Cluster HCCA clusters: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
At4g20010 No alias PTAC9 [Source:UniProtKB/TrEMBL;Acc:A0A178UX75] 0.03 Orthogroups_2024-Update
Bradi1g14220 No alias Primosome PriB/single-strand DNA-binding 0.03 Orthogroups_2024-Update
Bradi2g60720 No alias plastid transcriptionally active 9 0.04 Orthogroups_2024-Update
GRMZM2G128432 No alias Primosome PriB/single-strand DNA-binding 0.03 Orthogroups_2024-Update
HORVU3Hr1G107020.3 No alias cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.08 Orthogroups_2024-Update
LOC_Os01g72049 No alias retrotransposon, putative, centromere-specific, expressed 0.03 Orthogroups_2024-Update
Potri.001G394200 No alias plastid transcriptionally active 9 0.04 Orthogroups_2024-Update
Seita.5G451200.1 No alias cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.05 Orthogroups_2024-Update
Seita.9G162700.1 No alias ssDNA-binding protein *(OSB) 0.05 Orthogroups_2024-Update
Sobic.003G425100.1 No alias cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.06 Orthogroups_2024-Update
Sopen09g002310 No alias Single-strand binding protein family 0.11 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Predicted GO
MF GO:0004526 ribonuclease P activity IEP Predicted GO
MF GO:0004549 tRNA-specific ribonuclease activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006528 asparagine metabolic process IEP Predicted GO
BP GO:0006529 asparagine biosynthetic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000424 Primosome_PriB/ssb 89 184
No external refs found!