LOC_Os11g24610

Description : 60S ribosomal protein L38, putative, expressed

Gene families : OG_42_0001927 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001927_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os11g24610
Cluster	HCCA clusters: cluster_0072

Target	Alias	Description	ECC score	Gene Family Method
A4A49_59471	No alias	60s ribosomal protein l38	0.05	Orthogroups_2024-Update
AC190609.3_FG002	No alias	Ribosomal L38e protein family	0.03	Orthogroups_2024-Update
At3g59540	No alias	60S ribosomal protein L38...	0.02	Orthogroups_2024-Update
Bradi1g25302	No alias	Ribosomal L38e protein family	0.02	Orthogroups_2024-Update
Bradi3g41837	No alias	Ribosomal L38e protein family	0.03	Orthogroups_2024-Update
Brara.C02203.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Brara.E00357.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Brara.I04090.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Glyma.08G100000	No alias	Ribosomal L38e protein family	0.02	Orthogroups_2024-Update
Glyma.13G345600	No alias	Ribosomal L38e protein family	0.02	Orthogroups_2024-Update
HORVU2Hr1G043220.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
PSME_00035421-RA	No alias	(at3g59540 : 127.0) Ribosomal L38e protein family;...	0.04	Orthogroups_2024-Update
Potri.010G181200	No alias	Ribosomal L38e protein family	0.03	Orthogroups_2024-Update
Pp1s227_122V6	No alias	60s ribosomal protein l38	0.02	Orthogroups_2024-Update
Pp1s46_212V6	No alias	60s ribosomal protein l38	0.02	Orthogroups_2024-Update
Pp1s67_172V6	No alias	60s ribosomal protein l38	0.05	Orthogroups_2024-Update
Seita.2G274700.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.02	Orthogroups_2024-Update
Seita.2G333600.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Seita.2G344700.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Sobic.007G184600.2	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.02	Orthogroups_2024-Update
Solyc11g008510	No alias	60S ribosomal protein L38 (AHRD V3.3 *** RL38_SOLLC)	0.06	Orthogroups_2024-Update
Sopen11g004300	No alias	Ribosomal L38e protein family	0.07	Orthogroups_2024-Update
evm.model.tig00021719.6	No alias	(at3g59540 : 110.0) Ribosomal L38e protein family;...	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000105	histidine biosynthetic process	IEP	Predicted GO
BP	GO:0000278	mitotic cell cycle	IEP	Predicted GO
CC	GO:0000775	chromosome, centromeric region	IEP	Predicted GO
MF	GO:0003885	D-arabinono-1,4-lactone oxidase activity	IEP	Predicted GO
MF	GO:0003951	NAD+ kinase activity	IEP	Predicted GO
MF	GO:0004635	phosphoribosyl-AMP cyclohydrolase activity	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
BP	GO:0006547	histidine metabolic process	IEP	Predicted GO
BP	GO:0006739	NADP metabolic process	IEP	Predicted GO
BP	GO:0006741	NADP biosynthetic process	IEP	Predicted GO
BP	GO:0007049	cell cycle	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
MF	GO:0008134	transcription factor binding	IEP	Predicted GO
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Predicted GO
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Predicted GO
MF	GO:0016899	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	IEP	Predicted GO
MF	GO:0017025	TBP-class protein binding	IEP	Predicted GO
BP	GO:0018130	heterocycle biosynthetic process	IEP	Predicted GO
MF	GO:0019238	cyclohydrolase activity	IEP	Predicted GO
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
MF	GO:0020037	heme binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
BP	GO:0034613	cellular protein localization	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0045048	protein insertion into ER membrane	IEP	Predicted GO
MF	GO:0046906	tetrapyrrole binding	IEP	Predicted GO
BP	GO:0051205	protein insertion into membrane	IEP	Predicted GO
BP	GO:0052803	imidazole-containing compound metabolic process	IEP	Predicted GO
BP	GO:0070727	cellular macromolecule localization	IEP	Predicted GO
BP	GO:0071816	tail-anchored membrane protein insertion into ER membrane	IEP	Predicted GO
BP	GO:0072657	protein localization to membrane	IEP	Predicted GO
BP	GO:0090150	establishment of protein localization to membrane	IEP	Predicted GO
CC	GO:0098687	chromosomal region	IEP	Predicted GO
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002675	Ribosomal_L38e	2	63

External Links

No external refs found!

LOC_Os11g24610

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation