LOC_Os12g03090

Description : ribosomal protein, putative, expressed

Gene families : OG_42_0002098 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002098_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os12g03090
Cluster	HCCA clusters: cluster_0085

Target	Alias	Description	ECC score	Gene Family Method
138369	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.05	Orthogroups_2024-Update
A4A49_19998	No alias	40s ribosomal protein s16	0.07	Orthogroups_2024-Update
A4A49_23464	No alias	40s ribosomal protein s16	0.05	Orthogroups_2024-Update
A4A49_46097	No alias	40s ribosomal protein s16	0.04	Orthogroups_2024-Update
Brara.C00820.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Brara.C03046.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Brara.E03459.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Brara.J01727.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Cre13.g573351	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.04	Orthogroups_2024-Update
GRMZM2G353103	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.02	Orthogroups_2024-Update
GRMZM2G427014	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.04	Orthogroups_2024-Update
Glyma.02G103600	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.04	Orthogroups_2024-Update
Glyma.08G048200	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.05	Orthogroups_2024-Update
HORVU4Hr1G023530.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
HORVU4Hr1G023570.2	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
HORVU5Hr1G045620.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.02	Orthogroups_2024-Update
Mp1g14290.1	No alias	component RPS16 of SSU proteome	0.07	Orthogroups_2024-Update
Potri.001G304700	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.04	Orthogroups_2024-Update
Pp1s17_377V6	No alias	40s ribosomal protein s16	0.03	Orthogroups_2024-Update
Pp1s199_17V6	No alias	40s ribosomal protein s16	0.03	Orthogroups_2024-Update
Pp1s225_61V6	No alias	40s ribosomal protein s16	0.03	Orthogroups_2024-Update
Seita.7G306900.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Sobic.005G019700.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Sobic.008G021100.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Solyc04g026100	No alias	Ribosomal protein S16 (AHRD V3.3 *** A9P8S1_POPTR)	0.04	Orthogroups_2024-Update
Sopen04g014030	No alias	Ribosomal protein S9/S16	0.04	Orthogroups_2024-Update
evm.model.contig_435.17	No alias	(at2g09990 : 160.0) Ribosomal protein S5 domain 2-like...	0.07	Orthogroups_2024-Update
evm.model.tig00000123.14	No alias	(at2g09990 : 175.0) Ribosomal protein S5 domain 2-like...	0.06	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003684	damaged DNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0004140	dephospho-CoA kinase activity	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
BP	GO:0006289	nucleotide-excision repair	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
MF	GO:0008168	methyltransferase activity	IEP	Predicted GO
BP	GO:0010498	proteasomal protein catabolic process	IEP	Predicted GO
BP	GO:0015936	coenzyme A metabolic process	IEP	Predicted GO
BP	GO:0015937	coenzyme A biosynthetic process	IEP	Predicted GO
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Predicted GO
BP	GO:0030163	protein catabolic process	IEP	Predicted GO
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	Predicted GO
BP	GO:0033866	nucleoside bisphosphate biosynthetic process	IEP	Predicted GO
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	Predicted GO
BP	GO:0034030	ribonucleoside bisphosphate biosynthetic process	IEP	Predicted GO
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	Predicted GO
BP	GO:0034033	purine nucleoside bisphosphate biosynthetic process	IEP	Predicted GO
BP	GO:0034613	cellular protein localization	IEP	Predicted GO
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	Predicted GO
BP	GO:0045048	protein insertion into ER membrane	IEP	Predicted GO
BP	GO:0051205	protein insertion into membrane	IEP	Predicted GO
MF	GO:0061630	ubiquitin protein ligase activity	IEP	Predicted GO
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	Predicted GO
BP	GO:0070727	cellular macromolecule localization	IEP	Predicted GO
BP	GO:0071816	tail-anchored membrane protein insertion into ER membrane	IEP	Predicted GO
BP	GO:0072657	protein localization to membrane	IEP	Predicted GO
BP	GO:0090150	establishment of protein localization to membrane	IEP	Predicted GO
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000754	Ribosomal_S9	17	149

External Links

No external refs found!

LOC_Os12g03090

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation