Description : tetratricopeptide-like helical, putative, expressed
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Oryza release: LOC_Os12g06650 | |
Cluster | HCCA clusters: cluster_0054 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
171135 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.01 | Orthogroups_2024-Update | |
A4A49_23672 | No alias | pentatricopeptide repeat-containing protein, mitochondrial | 0.02 | Orthogroups_2024-Update | |
At3g23330 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Orthogroups_2024-Update | |
Bradi2g45250 | No alias | mitochondrial RNAediting factor 1 | 0.02 | Orthogroups_2024-Update | |
Brara.D01648.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Brara.E00818.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Brara.F01619.1 | No alias | RNA editing factor *(ECD1) | 0.02 | Orthogroups_2024-Update | |
Brara.I02594.1 | No alias | Unknown function | 0.01 | Orthogroups_2024-Update | |
GRMZM2G110483 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
GRMZM2G168378 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.01G011700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.02G071600 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.06G161900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.08G252400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.16G209700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.19G102300 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
HORVU0Hr1G009930.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
HORVU1Hr1G093220.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
HORVU2Hr1G012210.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
HORVU3Hr1G080810.1 | No alias | RNA editing factor *(MEF10) | 0.03 | Orthogroups_2024-Update | |
HORVU5Hr1G113330.1 | No alias | Unknown function | 0.01 | Orthogroups_2024-Update | |
HORVU7Hr1G111860.1 | No alias | Unknown function | 0.01 | Orthogroups_2024-Update | |
LOC_Os09g39970 | No alias | expressed protein | 0.02 | Orthogroups_2024-Update | |
MA_11074g0010 | No alias | (at3g57430 : 561.0) Encodes a chloroplast RNA editing... | 0.03 | Orthogroups_2024-Update | |
PSME_00024152-RA | No alias | (at2g13600 : 434.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00056424-RA | No alias | (at2g22070 : 461.0) pentatricopeptide (PPR)... | 0.02 | Orthogroups_2024-Update | |
Potri.002G075200 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.017G084900 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.017G091600 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Seita.1G191400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.3G244400.1 | No alias | RNA editing factor *(MEF32) | 0.01 | Orthogroups_2024-Update | |
Seita.4G046800.1 | No alias | RNA editing factor *(MEF29) | 0.01 | Orthogroups_2024-Update | |
Seita.5G460300.1 | No alias | RNA editing factor *(OTP72) | 0.02 | Orthogroups_2024-Update | |
Seita.7G164600.1 | No alias | RNA editing factor *(MEF12) | 0.03 | Orthogroups_2024-Update | |
Seita.7G324400.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Seita.9G001600.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.9G403900.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.002G084400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.002G172500.3 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.002G200500.3 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.004G266300.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.004G282000.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.004G312000.1 | No alias | RNA editing factor *(CLB19) | 0.02 | Orthogroups_2024-Update | |
Sobic.008G041000.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.010G190900.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Solyc01g020340 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
Solyc02g079380 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
Solyc11g064750 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.02 | Orthogroups_2024-Update | |
Sopen01g041720 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen07g003070 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000075 | cell cycle checkpoint | IEP | Predicted GO |
BP | GO:0000077 | DNA damage checkpoint | IEP | Predicted GO |
MF | GO:0000166 | nucleotide binding | IEP | Predicted GO |
BP | GO:0000278 | mitotic cell cycle | IEP | Predicted GO |
MF | GO:0000295 | adenine nucleotide transmembrane transporter activity | IEP | Predicted GO |
CC | GO:0000775 | chromosome, centromeric region | IEP | Predicted GO |
BP | GO:0002097 | tRNA wobble base modification | IEP | Predicted GO |
BP | GO:0002098 | tRNA wobble uridine modification | IEP | Predicted GO |
MF | GO:0003951 | NAD+ kinase activity | IEP | Predicted GO |
MF | GO:0005346 | purine ribonucleotide transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0005347 | ATP transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0005471 | ATP:ADP antiporter activity | IEP | Predicted GO |
MF | GO:0005506 | iron ion binding | IEP | Predicted GO |
MF | GO:0005524 | ATP binding | IEP | Predicted GO |
BP | GO:0006298 | mismatch repair | IEP | Predicted GO |
BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
BP | GO:0006739 | NADP metabolic process | IEP | Predicted GO |
BP | GO:0006741 | NADP biosynthetic process | IEP | Predicted GO |
BP | GO:0006862 | nucleotide transport | IEP | Predicted GO |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Predicted GO |
BP | GO:0007049 | cell cycle | IEP | Predicted GO |
MF | GO:0008131 | primary amine oxidase activity | IEP | Predicted GO |
MF | GO:0008144 | drug binding | IEP | Predicted GO |
MF | GO:0008514 | organic anion transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0008612 | peptidyl-lysine modification to peptidyl-hypusine | IEP | Predicted GO |
MF | GO:0015215 | nucleotide transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015216 | purine nucleotide transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015217 | ADP transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015301 | anion:anion antiporter activity | IEP | Predicted GO |
MF | GO:0015605 | organophosphate ester transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0015748 | organophosphate ester transport | IEP | Predicted GO |
BP | GO:0015931 | nucleobase-containing compound transport | IEP | Predicted GO |
MF | GO:0015932 | nucleobase-containing compound transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | IEP | Predicted GO |
MF | GO:0016641 | oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor | IEP | Predicted GO |
MF | GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | IEP | Predicted GO |
MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
BP | GO:0018205 | peptidyl-lysine modification | IEP | Predicted GO |
MF | GO:0020037 | heme binding | IEP | Predicted GO |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Predicted GO |
MF | GO:0030983 | mismatched DNA binding | IEP | Predicted GO |
BP | GO:0031570 | DNA integrity checkpoint | IEP | Predicted GO |
MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Predicted GO |
BP | GO:0033554 | cellular response to stress | IEP | Predicted GO |
CC | GO:0033588 | Elongator holoenzyme complex | IEP | Predicted GO |
BP | GO:0034613 | cellular protein localization | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
MF | GO:0036094 | small molecule binding | IEP | Predicted GO |
MF | GO:0043168 | anion binding | IEP | Predicted GO |
BP | GO:0043412 | macromolecule modification | IEP | Predicted GO |
BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
BP | GO:0045048 | protein insertion into ER membrane | IEP | Predicted GO |
BP | GO:0045786 | negative regulation of cell cycle | IEP | Predicted GO |
MF | GO:0046906 | tetrapyrrole binding | IEP | Predicted GO |
MF | GO:0048037 | cofactor binding | IEP | Predicted GO |
MF | GO:0048038 | quinone binding | IEP | Predicted GO |
BP | GO:0051205 | protein insertion into membrane | IEP | Predicted GO |
BP | GO:0051604 | protein maturation | IEP | Predicted GO |
BP | GO:0051716 | cellular response to stimulus | IEP | Predicted GO |
BP | GO:0055114 | oxidation-reduction process | IEP | Predicted GO |
BP | GO:0070727 | cellular macromolecule localization | IEP | Predicted GO |
BP | GO:0071816 | tail-anchored membrane protein insertion into ER membrane | IEP | Predicted GO |
BP | GO:0072657 | protein localization to membrane | IEP | Predicted GO |
BP | GO:0090150 | establishment of protein localization to membrane | IEP | Predicted GO |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
CC | GO:0098687 | chromosomal region | IEP | Predicted GO |
MF | GO:0099516 | ion antiporter activity | IEP | Predicted GO |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Predicted GO |
MF | GO:1901505 | carbohydrate derivative transmembrane transporter activity | IEP | Predicted GO |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 76 | 124 |
IPR002885 | Pentatricopeptide_repeat | 287 | 315 |
IPR002885 | Pentatricopeptide_repeat | 151 | 174 |
IPR002885 | Pentatricopeptide_repeat | 325 | 348 |
IPR002885 | Pentatricopeptide_repeat | 182 | 211 |
IPR002885 | Pentatricopeptide_repeat | 429 | 454 |
IPR032867 | DYW_dom | 458 | 594 |
No external refs found! |