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  5. LOC_Os12g34510

LOC_Os12g34510


Description : Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os12g34510
Cluster HCCA clusters: cluster_0084

Target Alias Description ECC score Gene Family Method Actions
Brara.A02813.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Brara.F00561.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Glyma.12G215500 No alias histone H2A 10 0.04 Orthogroups_2024-Update
Glyma.13G333800 No alias histone H2A 12 0.03 Orthogroups_2024-Update
HORVU6Hr1G092390.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Pp1s452_4V6 No alias histone 2 0.02 Orthogroups_2024-Update
Seita.2G343400.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
Sobic.002G059200.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
Sobic.002G329900.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005787 signal peptidase complex IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 13 92
IPR032454 Histone_H2A_C 95 128
No external refs found!