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  5. LOC_Os12g42280

LOC_Os12g42280


Description : 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed


Gene families : OG_42_0000424 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000424_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os12g42280
Cluster HCCA clusters: cluster_0031

Target Alias Description ECC score Gene Family Method Actions
At3g24220 No alias 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic... 0.02 Orthogroups_2024-Update
Brara.C03527.1 No alias EC_1.13 oxidoreductase acting on single donor with... 0.02 Orthogroups_2024-Update
Brara.E02677.1 No alias EC_1.13 oxidoreductase acting on single donor with... 0.02 Orthogroups_2024-Update
Brara.H01021.1 No alias carotenoid cleavage dioxygenase *(CCD4) & EC_1.13... 0.03 Orthogroups_2024-Update
Brara.I04483.1 No alias carotenoid cleavage dioxygenase *(CCD1) & EC_1.13... 0.03 Orthogroups_2024-Update
LOC_Os07g05940 No alias 9-cis-epoxycarotenoid dioxygenase 1, chloroplast... 0.03 Orthogroups_2024-Update
PSME_00033517-RA No alias (at4g19170 : 642.0) chloroplast-targeted member of a... 0.02 Orthogroups_2024-Update
PSME_00053495-RA No alias (at3g14440 : 677.0) Encodes ... 0.02 Orthogroups_2024-Update
PSME_00056713-RA No alias (at4g19170 : 585.0) chloroplast-targeted member of a... 0.02 Orthogroups_2024-Update
Potri.001G265600 No alias carotenoid cleavage dioxygenase 1 0.03 Orthogroups_2024-Update
Sobic.001G155300.1 No alias EC_1.13 oxidoreductase acting on single donor with... 0.02 Orthogroups_2024-Update
Sobic.002G037400.1 No alias EC_1.13 oxidoreductase acting on single donor with... 0.03 Orthogroups_2024-Update
Sobic.004G268500.1 No alias carotenoid cleavage dioxygenase *(CCD4) & EC_1.13... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Predicted GO
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
BP GO:0006333 chromatin assembly or disassembly IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
InterPro domains Description Start Stop
IPR004294 Carotenoid_Oase 135 604
No external refs found!