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  5. LOC_Os12g44070

LOC_Os12g44070


Description : nodulin, putative, expressed


Gene families : OG_42_0000169 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000169_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os12g44070
Cluster HCCA clusters: cluster_0139

Target Alias Description ECC score Gene Family Method Actions
89661 No alias Major facilitator superfamily protein 0.02 Orthogroups_2024-Update
A4A49_21347 No alias protein nuclear fusion defective 4 0.03 Orthogroups_2024-Update
A4A49_27924 No alias protein nuclear fusion defective 4 0.02 Orthogroups_2024-Update
A4A49_39186 No alias protein nuclear fusion defective 4 0.03 Orthogroups_2024-Update
GRMZM2G479546 No alias Major facilitator superfamily protein 0.02 Orthogroups_2024-Update
Glyma.16G158200 No alias Major facilitator superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G185600 No alias Major facilitator superfamily protein 0.02 Orthogroups_2024-Update
Glyma.20G113000 No alias Major facilitator superfamily protein 0.03 Orthogroups_2024-Update
Glyma.20G113100 No alias Major facilitator superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os03g58580 No alias nodulin, putative, expressed 0.04 Orthogroups_2024-Update
PSME_00015340-RA No alias (at2g39210 : 432.0) Major facilitator superfamily... 0.03 Orthogroups_2024-Update
Pp1s107_170V6 No alias F24D13.9; nodulin family protein [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update
Pp1s406_11V6 No alias F25A4.25; nodulin family protein [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update
Seita.3G405900.1 No alias UMF23-type solute transporter 0.04 Orthogroups_2024-Update
Seita.7G074700.1 No alias UMF23-type solute transporter 0.03 Orthogroups_2024-Update
Seita.9G052200.1 No alias UMF23-type solute transporter 0.04 Orthogroups_2024-Update
Solyc03g019650 No alias Major facilitator superfamily protein (AHRD V3.3 *** AT5G14120.1) 0.02 Orthogroups_2024-Update
Sopen03g032390 No alias Nodulin-like 0.02 Orthogroups_2024-Update
Sopen05g033980 No alias Nodulin-like 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
CC GO:0031248 protein acetyltransferase complex IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
CC GO:0070461 SAGA-type complex IEP Predicted GO
CC GO:1902493 acetyltransferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR010658 Nodulin-like 17 268
No external refs found!