1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc09g020130

Solyc09g020130


Description : 60S ribosomal protein L5 (AHRD V3.3 *** RL5_CUCSA)


Gene families : OG_42_0001609 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001609_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc09g020130
Cluster HCCA clusters: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
144921 No alias ribosomal protein L5 0.05 Orthogroups_2024-Update
A4A49_19400 No alias 60s ribosomal protein l5 0.07 Orthogroups_2024-Update
At5g39740 No alias RPL5B [Source:UniProtKB/TrEMBL;Acc:A0A178UJU5] 0.03 Orthogroups_2024-Update
Bradi1g13630 No alias ribosomal protein L5 B 0.06 Orthogroups_2024-Update
Bradi4g13640 No alias ribosomal protein L5 0.08 Orthogroups_2024-Update
Bradi5g09500 No alias ribosomal protein L5 B 0.03 Orthogroups_2024-Update
Brara.C04001.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Brara.C04002.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.08 Orthogroups_2024-Update
Brara.F03014.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.08 Orthogroups_2024-Update
Brara.G00424.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Cre14.g621450 No alias ribosomal protein L5 B 0.04 Orthogroups_2024-Update
Glyma.07G059900 No alias ribosomal protein L5 B 0.04 Orthogroups_2024-Update
Glyma.13G280200 No alias ribosomal protein L5 B 0.04 Orthogroups_2024-Update
Glyma.13G280300 No alias ribosomal protein L5 B 0.05 Orthogroups_2024-Update
Glyma.16G028800 No alias ribosomal protein L5 B 0.07 Orthogroups_2024-Update
HORVU5Hr1G092630.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
MA_70965g0010 No alias (q6unt2|rl5_cucsa : 417.0) 60S ribosomal protein L5 -... 0.07 Orthogroups_2024-Update
Mp4g15800.1 No alias component RPL5 of LSU proteome component 0.02 Orthogroups_2024-Update
Potri.014G174000 No alias ribosomal protein L5 B 0.03 Orthogroups_2024-Update
Pp1s364_3V6 No alias ribosomal protein 0.07 Orthogroups_2024-Update
Pp1s38_329V6 No alias ribosomal protein 0.04 Orthogroups_2024-Update
Pp1s97_115V6 No alias ribosomal protein 0.09 Orthogroups_2024-Update
Seita.5G413500.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Sobic.003G387900.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.11 Orthogroups_2024-Update
Solyc06g007670 No alias 60S ribosomal protein L5 (AHRD V3.3 *** RL5_CUCSA) 0.05 Orthogroups_2024-Update
Sopen06g034230 No alias Ribosomal L18p/L5e family 0.08 Orthogroups_2024-Update
Sopen09g013020 No alias Ribosomal L18p/L5e family 0.07 Orthogroups_2024-Update
evm.model.contig_3443.5 No alias (q6unt2|rl5_cucsa : 302.0) 60S ribosomal protein L5 -... 0.08 Orthogroups_2024-Update
evm.model.tig00000194.49 No alias (o65353|rl5_helan : 322.0) 60S ribosomal protein L5 -... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
MF GO:0008097 5S rRNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005742 mitochondrial outer membrane translocase complex IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006839 mitochondrial transport IEP Predicted GO
BP GO:0007005 mitochondrion organization IEP Predicted GO
BP GO:0007006 mitochondrial membrane organization IEP Predicted GO
BP GO:0007008 outer mitochondrial membrane organization IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
MF GO:0019107 myristoyltransferase activity IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044455 mitochondrial membrane part IEP Predicted GO
BP GO:0045040 protein import into mitochondrial outer membrane IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
BP GO:0070585 protein localization to mitochondrion IEP Predicted GO
BP GO:0072655 establishment of protein localization to mitochondrion IEP Predicted GO
BP GO:0072657 protein localization to membrane IEP Predicted GO
BP GO:0090150 establishment of protein localization to membrane IEP Predicted GO
BP GO:0090151 establishment of protein localization to mitochondrial membrane IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098798 mitochondrial protein complex IEP Predicted GO
CC GO:0098799 outer mitochondrial membrane protein complex IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR025607 Rbsml_L5e/L18P_C 191 280
IPR005485 Rbsml_L5_euk/L18_arc 14 174
No external refs found!