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  5. Cre03.g165750

Cre03.g165750


Description : nuclear RNA polymerase C1


Gene families : OG_42_0001434 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001434_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre03.g165750
Cluster HCCA clusters: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
At5g60040 No alias DNA-directed RNA polymerase subunit... 0.01 Orthogroups_2024-Update
Kfl00550_0020 kfl00550_0020_v1.1 (at4g35800 : 2125.0) Encodes the unique largest subunit... 0.03 Orthogroups_2024-Update
Solyc11g072730 No alias DNA-directed RNA polymerase subunit (AHRD V3.3 *** K4DAY0_SOLLC) 0.02 Orthogroups_2024-Update
Sopen11g030400 No alias RNA polymerase Rpb1, domain 5 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA InterProScan predictions
BP GO:0006351 transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Predicted GO
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003724 RNA helicase activity IEP Predicted GO
MF GO:0004004 ATP-dependent RNA helicase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0004549 tRNA-specific ribonuclease activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008186 RNA-dependent ATPase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR007080 RNA_pol_Rpb1_1 28 363
IPR007083 RNA_pol_Rpb1_4 730 836
IPR000722 RNA_pol_asu 365 529
IPR007081 RNA_pol_Rpb1_5 843 1420
IPR007066 RNA_pol_Rpb1_3 534 705
No external refs found!