1. Home
  2. Species
  3. Chlamydomonas reinhardtii
  4. Sequence
  5. Cre03.g182950

Cre03.g182950


Description : RNA helicase family protein


Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre03.g182950
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
A4A49_00869 No alias putative pre-mrna-splicing factor atp-dependent rna... 0.02 Orthogroups_2024-Update
At2g47250 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 Orthogroups_2024-Update
Bradi1g64190 No alias RNA helicase family protein 0.01 Orthogroups_2024-Update
Bradi3g13460 No alias ATP-dependent RNA helicase, putative 0.01 Orthogroups_2024-Update
Brara.C02356.1 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 Orthogroups_2024-Update
Brara.E01777.1 No alias RNA helicase *(Prp2) 0.02 Orthogroups_2024-Update
Glyma.02G119000 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Glyma.05G146100 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Glyma.13G342400 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Glyma.18G004000 No alias ATP-dependent RNA helicase, putative 0.02 Orthogroups_2024-Update
Glyma.19G218200 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Kfl00433_0080 kfl00433_0080_v1.1 (at1g33390 : 423.0) Over-expression of this gene results... 0.03 Orthogroups_2024-Update
Mp2g13680.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 Orthogroups_2024-Update
Mp4g04560.1 No alias ATP-dependent RNA helicase DEAH13 OS=Arabidopsis... 0.02 Orthogroups_2024-Update
PSME_00019512-RA No alias (at3g62310 : 1077.0) RNA helicase family protein;... 0.02 Orthogroups_2024-Update
Potri.014G117900 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Pp1s312_57V6 No alias deah-box rna helicase 0.01 Orthogroups_2024-Update
Pp1s427_10V6 No alias atp-dependent rna 0.02 Orthogroups_2024-Update
Seita.1G136100.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Seita.4G042700.1 No alias RNA helicase *(Prp22) 0.02 Orthogroups_2024-Update
Sobic.003G124600.1 No alias RNA helicase *(Prp2) 0.02 Orthogroups_2024-Update
evm.model.contig_524.2 No alias (at3g62310 : 724.0) RNA helicase family protein;... 0.04 Orthogroups_2024-Update
evm.model.tig00000113.111 No alias (at1g33390 : 274.0) Over-expression of this gene results... 0.02 Orthogroups_2024-Update
evm.model.tig00021589.29 No alias (at3g26560 : 868.0) ATP-dependent RNA helicase,... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000469 cleavage involved in rRNA processing IEP Predicted GO
BP GO:0001932 regulation of protein phosphorylation IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003724 RNA helicase activity IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004004 ATP-dependent RNA helicase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008186 RNA-dependent ATPase activity IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0019220 regulation of phosphate metabolic process IEP Predicted GO
MF GO:0019900 kinase binding IEP Predicted GO
MF GO:0019901 protein kinase binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
BP GO:0031399 regulation of protein modification process IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0032268 regulation of cellular protein metabolic process IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042325 regulation of phosphorylation IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043549 regulation of kinase activity IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
BP GO:0045859 regulation of protein kinase activity IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0050790 regulation of catalytic activity IEP Predicted GO
BP GO:0051174 regulation of phosphorus metabolic process IEP Predicted GO
BP GO:0051246 regulation of protein metabolic process IEP Predicted GO
BP GO:0051338 regulation of transferase activity IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
BP GO:0065009 regulation of molecular function IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Predicted GO
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 254 385
IPR011709 DUF1605 598 674
IPR003593 AAA+_ATPase 63 205
IPR007502 Helicase-assoc_dom 448 536
No external refs found!