1. Home
  2. Species
  3. Chlamydomonas reinhardtii
  4. Sequence
  5. Cre03.g196850

Cre03.g196850


Description : transducin family protein / WD-40 repeat family protein


Gene families : OG_42_0006079 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006079_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre03.g196850
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AC212570.3_FG006 No alias transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
At2g47990 No alias Protein SLOW WALKER 1 [Source:UniProtKB/Swiss-Prot;Acc:O82266] 0.07 Orthogroups_2024-Update
Bradi1g53790 No alias transducin family protein / WD-40 repeat family protein 0.02 Orthogroups_2024-Update
Brara.C00238.1 No alias SSU processome assembly factor *(SWA1) 0.07 Orthogroups_2024-Update
Glyma.02G151500 No alias transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
Glyma.10G022600 No alias transducin family protein / WD-40 repeat family protein 0.02 Orthogroups_2024-Update
HORVU7Hr1G117550.1 No alias SSU processome assembly factor *(SWA1) 0.03 Orthogroups_2024-Update
Mp4g00830.1 No alias SSU processome assembly factor (SWA1) 0.01 Orthogroups_2024-Update
Potri.014G135600 No alias transducin family protein / WD-40 repeat family protein 0.06 Orthogroups_2024-Update
Pp1s62_85V6 No alias No description available 0.03 Orthogroups_2024-Update
Seita.7G244600.1 No alias SSU processome assembly factor *(SWA1) 0.05 Orthogroups_2024-Update
Sobic.007G137350.1 No alias SSU processome assembly factor *(SWA1) 0.11 Orthogroups_2024-Update
Solyc05g010480 No alias No description available 0.07 Orthogroups_2024-Update
Sopen05g006280 No alias UTP15 C terminal 0.12 Orthogroups_2024-Update
evm.model.contig_3524.8 No alias (at2g47990 : 220.0) Encodes a transducin family... 0.12 Orthogroups_2024-Update
evm.model.tig00020927.23 No alias (at2g47990 : 191.0) Encodes a transducin family... 0.11 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
CC GO:0005730 nucleolus IEA InterProScan predictions
BP GO:0006364 rRNA processing IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0003937 IMP cyclohydrolase activity IEP Predicted GO
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0036265 RNA (guanine-N7)-methylation IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 210 239
IPR001680 WD40_repeat 162 198
IPR018983 U3_snoRNA-assocProt_15_C 373 514
No external refs found!