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  5. Cre03.g197000

Cre03.g197000


Description : Ribosomal RNA processing Brix domain protein


Gene families : OG_42_0004817 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004817_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre03.g197000
Cluster HCCA clusters: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
At3g23620 No alias Ribosome production factor 2 homolog... 0.03 Orthogroups_2024-Update
Bradi2g57720 No alias Ribosomal RNA processing Brix domain protein 0.04 Orthogroups_2024-Update
Bradi4g31410 No alias Ribosomal RNA processing Brix domain protein 0.06 Orthogroups_2024-Update
Brara.A02631.1 No alias component *(ARPF2) of ARPF2-ARRS1 complex 0.03 Orthogroups_2024-Update
Brara.G00716.1 No alias component *(ARPF2) of ARPF2-ARRS1 complex 0.03 Orthogroups_2024-Update
GRMZM2G359874 No alias Ribosomal RNA processing Brix domain protein 0.01 Orthogroups_2024-Update
Glyma.13G151300 No alias Ribosomal RNA processing Brix domain protein 0.04 Orthogroups_2024-Update
HORVU5Hr1G061870.1 No alias component *(ARPF2) of ARPF2-ARRS1 complex 0.04 Orthogroups_2024-Update
Kfl00047_0160 kfl00047_0160_v1.1 (at3g23620 : 269.0) Ribosomal RNA processing Brix domain... 0.07 Orthogroups_2024-Update
MA_89741g0010 No alias (q9awm9|bxdc1_orysa : 399.0) Brix domain-containing... 0.02 Orthogroups_2024-Update
Mp4g01500.1 No alias component ARPF2 of ARPF2-ARRS1 complex 0.07 Orthogroups_2024-Update
PSME_00044516-RA No alias (q9awm9|bxdc1_orysa : 271.0) Brix domain-containing... 0.01 Orthogroups_2024-Update
Potri.015G088700 No alias Ribosomal RNA processing Brix domain protein 0.04 Orthogroups_2024-Update
Pp1s13_19V6 No alias brix domain containing 1 0.04 Orthogroups_2024-Update
Seita.1G014600.1 No alias component *(ARPF2) of ARPF2-ARRS1 complex 0.02 Orthogroups_2024-Update
Seita.3G186100.1 No alias component *(ARPF2) of ARPF2-ARRS1 complex 0.02 Orthogroups_2024-Update
Sobic.009G190300.1 No alias component *(ARPF2) of ARPF2-ARRS1 complex 0.06 Orthogroups_2024-Update
Solyc10g083600 No alias Brix domain-containing protein (AHRD V3.3 *** H9A0F8_NICBE) 0.05 Orthogroups_2024-Update
Sopen10g033080 No alias Brix domain 0.05 Orthogroups_2024-Update
evm.model.contig_462.6 No alias (at3g23620 : 201.0) Ribosomal RNA processing Brix domain... 0.07 Orthogroups_2024-Update
evm.model.tig00001003.36 No alias (at3g23620 : 175.0) Ribosomal RNA processing Brix domain... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003725 double-stranded RNA binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006383 transcription by RNA polymerase III IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008192 RNA guanylyltransferase activity IEP Predicted GO
MF GO:0008193 tRNA guanylyltransferase activity IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0008252 nucleotidase activity IEP Predicted GO
MF GO:0008253 5'-nucleotidase activity IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009262 deoxyribonucleotide metabolic process IEP Predicted GO
BP GO:0009264 deoxyribonucleotide catabolic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
MF GO:0070568 guanylyltransferase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR007109 Brix 47 242
No external refs found!