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  4. Sequence
  5. Solyc09g060080

Solyc09g060080


Description : Helicase/SANT-associated, DNA binding protein (AHRD V3.3 *** AT3G24880.3)


Gene families : OG_42_0002455 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002455_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc09g060080
Cluster HCCA clusters: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
Kfl00231_0110 kfl00231_0110_v1.1 (at3g24870 : 95.5) Helicase/SANT-associated, DNA binding... 0.02 Orthogroups_2024-Update
MA_118641g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP Predicted GO
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
BP GO:0016482 cytosolic transport IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
CC GO:0030904 retromer complex IEP Predicted GO
BP GO:0042147 retrograde transport, endosome to Golgi IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
InterPro domains Description Start Stop
IPR014012 HSA_dom 517 556
No external refs found!