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  5. Cre06.g282600

Cre06.g282600


Description : P-loop containing nucleoside triphosphate hydrolases superfamily protein


Gene families : OG_42_0004890 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004890_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre06.g282600
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Bradi2g03960 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
GRMZM2G303752 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Orthogroups_2024-Update
Glyma.18G024200 No alias P-loop containing nucleoside triphosphate hydrolases... 0.01 Orthogroups_2024-Update
Seita.5G114600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G058800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
evm.model.contig_3491.5 No alias (at5g05450 : 337.0) P-loop containing nucleoside... 0.02 Orthogroups_2024-Update
evm.model.tig00020684.38 No alias (at5g05450 : 444.0) P-loop containing nucleoside... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Predicted GO
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003724 RNA helicase activity IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004004 ATP-dependent RNA helicase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0004549 tRNA-specific ribonuclease activity IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008186 RNA-dependent ATPase activity IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 3 93
IPR025313 DUF4217 435 492
IPR001650 Helicase_C 198 313
No external refs found!