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  5. Solyc09g061430

Solyc09g061430


Description : nuclear GTPase DQ304482


Gene families : OG_42_0003992 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003992_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc09g061430
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
At3g07050 No alias Guanine nucleotide-binding protein-like NSN1... 0.03 Orthogroups_2024-Update
Bradi1g31710 No alias GTP-binding family protein 0.07 Orthogroups_2024-Update
Bradi1g76700 No alias GTP-binding family protein 0.07 Orthogroups_2024-Update
Brara.A03628.1 No alias regulatory GTPase (NUG1/NSN1) of LSU processome 0.04 Orthogroups_2024-Update
Brara.C03191.1 No alias regulatory GTPase (NUG1/NSN1) of LSU processome 0.11 Orthogroups_2024-Update
Brara.E03243.1 No alias regulatory GTPase (NUG1/NSN1) of LSU processome 0.04 Orthogroups_2024-Update
Cre12.g533050 No alias GTP-binding family protein 0.09 Orthogroups_2024-Update
Glyma.10G122200 No alias GTP-binding family protein 0.04 Orthogroups_2024-Update
Glyma.20G073900 No alias GTP-binding family protein 0.02 Orthogroups_2024-Update
HORVU2Hr1G016650.1 No alias regulatory GTPase (NUG1/NSN1) of LSU processome 0.06 Orthogroups_2024-Update
Kfl00223_0170 kfl00223_0170_v1.... (at3g07050 : 427.0) GTP-binding family protein;... 0.02 Orthogroups_2024-Update
Mp8g17210.1 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.03 Orthogroups_2024-Update
Potri.002G241100 No alias GTP-binding family protein 0.05 Orthogroups_2024-Update
Pp1s91_142V6 No alias guanine nucleotide binding protein 3 0.04 Orthogroups_2024-Update
Seita.9G087300.1 No alias regulatory GTPase (NUG1/NSN1) of LSU processome 0.11 Orthogroups_2024-Update
Sobic.001G177100.1 No alias regulatory GTPase (NUG1/NSN1) of LSU processome 0.12 Orthogroups_2024-Update
Sopen06g034900 No alias 50S ribosome-binding GTPase 0.07 Orthogroups_2024-Update
Sopen09g024250 No alias GNL3L/Grn1 putative GTPase 0.18 Orthogroups_2024-Update
evm.model.contig_2299.5 No alias (at3g07050 : 275.0) GTP-binding family protein;... 0.04 Orthogroups_2024-Update
evm.model.tig00001215.14 No alias (at3g07050 : 206.0) GTP-binding family protein;... 0.12 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR006073 GTP_binding_domain 272 334
IPR014813 Gnl3_N_dom 16 91
No external refs found!