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  5. Cre06.g289950

Cre06.g289950


Description : RNA helicase, ATP-dependent, SK12/DOB1 protein


Gene families : OG_42_0001297 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre06.g289950
Cluster HCCA clusters: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
A4A49_32982 No alias dexh-box atp-dependent rna helicase dexh10 0.02 Orthogroups_2024-Update
At1g59760 No alias DExH-box ATP-dependent RNA helicase DExH9... 0.02 Orthogroups_2024-Update
Bradi4g24170 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.03 Orthogroups_2024-Update
Brara.A02352.1 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.02 Orthogroups_2024-Update
Brara.I01587.1 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.04 Orthogroups_2024-Update
GRMZM2G040995 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.02 Orthogroups_2024-Update
Pp1s58_31V6 No alias superkiller viralicidic activity 2-like 2 0.02 Orthogroups_2024-Update
Seita.4G003400.1 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.01 Orthogroups_2024-Update
Solyc12g017860 No alias ATP-dependent RNA helicase DOB1 (AHRD V3.3 *** A0A0K9PZL4_ZOSMR) 0.01 Orthogroups_2024-Update
Sopen01g045490 No alias rRNA-processing arch domain 0.03 Orthogroups_2024-Update
evm.model.tig00020723.108 No alias (at1g59760 : 938.0) RNA helicase, ATP-dependent,... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
MF GO:0031418 L-ascorbic acid binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0048029 monosaccharide binding IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR025696 rRNA_proc-arch_dom 610 883
IPR011545 DEAD/DEAH_box_helicase_dom 103 249
IPR012961 Ski2_C 912 1081
IPR001650 Helicase_C 473 551
No external refs found!