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  5. Cre07.g322176

Cre07.g322176


Description : nuclear RNA polymerase A2


Gene families : OG_42_0005017 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre07.g322176
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
At1g29940 No alias DNA-directed RNA polymerase subunit beta... 0.05 Orthogroups_2024-Update
Bradi3g29917 No alias nuclear RNA polymerase A2 0.04 Orthogroups_2024-Update
Brara.G00750.1 No alias component *(NRPA2) of RNA polymerase I complex 0.07 Orthogroups_2024-Update
LOC_Os10g35290 No alias DNA-directed RNA polymerase I subunit RPA2, putative, expressed 0.03 Orthogroups_2024-Update
Mp3g15820.1 No alias subunit 2 of Pol I RNA polymerase 0.03 Orthogroups_2024-Update
Potri.001G030750 No alias nuclear RNA polymerase A2 0.01 Orthogroups_2024-Update
Pp1s169_131V6 No alias dna-directed rna polymerase i 0.05 Orthogroups_2024-Update
Sobic.004G019200.1 No alias component *(NRPA2) of RNA polymerase I complex 0.01 Orthogroups_2024-Update
Solyc01g086710 No alias DNA-directed RNA polymerase subunit beta (AHRD V3.3 ***... 0.07 Orthogroups_2024-Update
Sopen01g033710 No alias RNA polymerase Rpb2, domain 6 0.07 Orthogroups_2024-Update
evm.model.contig_635.2 No alias (at1g29940 : 639.0) Encodes a subunit of RNA polymerase... 0.02 Orthogroups_2024-Update
evm.model.tig00021348.37 No alias (at1g29940 : 144.0) Encodes a subunit of RNA polymerase... 0.1 Orthogroups_2024-Update
evm.model.tig00021348.38 No alias (at1g29940 : 348.0) Encodes a subunit of RNA polymerase... 0.14 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006351 transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
BP GO:0000469 cleavage involved in rRNA processing IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Predicted GO
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007641 RNA_pol_Rpb2_7 933 1045
IPR007120 DNA-dir_RNAP_su2_dom 761 930
IPR007644 RNA_pol_bsu_protrusion 42 429
IPR009674 Rpa2_dom_4 594 670
IPR007642 RNA_pol_Rpb2_2 229 397
IPR007645 RNA_pol_Rpb2_3 481 545
No external refs found!