Description : transcription regulatory protein SNF2, putative
Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Chlamydomonas release: Cre07.g325700 | |
Cluster | HCCA clusters: Cluster_59 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
155996 | No alias | chromatin remodeling factor CHD3 (PICKLE) | 0.02 | Orthogroups_2024-Update | |
177985 | No alias | chromatin remodeling factor CHD3 (PICKLE) | 0.02 | Orthogroups_2024-Update | |
AC235535.1_FG001 | No alias | chromatin-remodeling protein 11 | 0.02 | Orthogroups_2024-Update | |
At2g25170 | No alias | chromatin remodeling factor CHD3 (PICKLE)... | 0.02 | Orthogroups_2024-Update | |
Bradi1g18910 | No alias | chromatin remodeling 5 | 0.03 | Orthogroups_2024-Update | |
Bradi1g44177 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.03 | Orthogroups_2024-Update | |
Bradi2g36380 | No alias | Homeotic gene regulator | 0.02 | Orthogroups_2024-Update | |
GRMZM2G010085 | No alias | chromatin remodeling factor17 | 0.02 | Orthogroups_2024-Update | |
GRMZM2G010342 | No alias | chromatin remodeling 5 | 0.02 | Orthogroups_2024-Update | |
GRMZM2G316191 | No alias | chromatin remodeling 4 | 0.02 | Orthogroups_2024-Update | |
GRMZM2G387890 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.02 | Orthogroups_2024-Update | |
GRMZM2G467799 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.03 | Orthogroups_2024-Update | |
Glyma.05G131500 | No alias | chromatin remodeling 4 | 0.02 | Orthogroups_2024-Update | |
Glyma.10G250500 | No alias | Homeotic gene regulator | 0.02 | Orthogroups_2024-Update | |
Glyma.11G004100 | No alias | Homeotic gene regulator | 0.02 | Orthogroups_2024-Update | |
Kfl00004_0580 | kfl00004_0580_v1.1 | (at2g13370 : 1061.0) chromatin remodeling 5 (CHR5);... | 0.02 | Orthogroups_2024-Update | |
Mp5g06580.2 | No alias | chromatin remodeling factor (Snf2) | 0.03 | Orthogroups_2024-Update | |
Mp8g17660.1 | No alias | chromatin remodeling factor (Snf2) | 0.04 | Orthogroups_2024-Update | |
PSME_00006567-RA | No alias | (at5g44800 : 1157.0) chromatin remodeling 4 (CHR4);... | 0.02 | Orthogroups_2024-Update | |
Pp1s360_39V6 | No alias | syd atpase chromatin binding | 0.03 | Orthogroups_2024-Update | |
Seita.4G050000.1 | No alias | CHD3-type chromatin remodeling factor *(PKL/PKR) | 0.02 | Orthogroups_2024-Update | |
Seita.4G112400.1 | No alias | SMARCA component *(SYD/BRM/MINU) | 0.02 | Orthogroups_2024-Update | |
Sobic.003G163200.1 | No alias | ATPase component *(CHR11/CHR17) of ISWI chromatin... | 0.02 | Orthogroups_2024-Update | |
Sobic.010G065300.1 | No alias | CHD3-type chromatin remodeling factor *(PKL/PKR) | 0.04 | Orthogroups_2024-Update | |
Sopen01g031470 | No alias | SNF2 family N-terminal domain | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005524 | ATP binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Predicted GO |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Predicted GO |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Predicted GO |
BP | GO:0002097 | tRNA wobble base modification | IEP | Predicted GO |
BP | GO:0002098 | tRNA wobble uridine modification | IEP | Predicted GO |
MF | GO:0004518 | nuclease activity | IEP | Predicted GO |
MF | GO:0004527 | exonuclease activity | IEP | Predicted GO |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0006397 | mRNA processing | IEP | Predicted GO |
BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
BP | GO:0008380 | RNA splicing | IEP | Predicted GO |
MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Predicted GO |
MF | GO:0008536 | Ran GTPase binding | IEP | Predicted GO |
MF | GO:0017016 | Ras GTPase binding | IEP | Predicted GO |
MF | GO:0019899 | enzyme binding | IEP | Predicted GO |
MF | GO:0031267 | small GTPase binding | IEP | Predicted GO |
CC | GO:0033588 | Elongator holoenzyme complex | IEP | Predicted GO |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
MF | GO:0051020 | GTPase binding | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000330 | SNF2_N | 926 | 1000 |
No external refs found! |