Solyc09g065330

Description : 40S ribosomal protein S24 (AHRD V3.3 *** K4CAS8_SOLLC)

Gene families : OG_42_0001483 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001483_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc09g065330
Cluster	HCCA clusters: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
271584	No alias	Ribosomal protein S24e family protein	0.15	Orthogroups_2024-Update
A4A49_64768	No alias	40s ribosomal protein s24-1	0.16	Orthogroups_2024-Update
At3g04920	No alias	40S ribosomal protein S24-1...	0.06	Orthogroups_2024-Update
At5g28060	No alias	40S ribosomal protein S24-2...	0.03	Orthogroups_2024-Update
Bradi1g38010	No alias	Ribosomal protein S24e family protein	0.03	Orthogroups_2024-Update
Bradi3g08680	No alias	Ribosomal protein S24e family protein	0.13	Orthogroups_2024-Update
Brara.A03743.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Brara.B03525.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.24	Orthogroups_2024-Update
Brara.E03413.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.12	Orthogroups_2024-Update
Brara.F02892.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.25	Orthogroups_2024-Update
Brara.I00438.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.24	Orthogroups_2024-Update
Cre10.g456200	No alias	Ribosomal protein S24e family protein	0.26	Orthogroups_2024-Update
GRMZM2G151252	No alias	Ribosomal protein S24e family protein	0.1	Orthogroups_2024-Update
GRMZM2G171426	No alias	Ribosomal protein S24e family protein	0.1	Orthogroups_2024-Update
Glyma.03G245300	No alias	Ribosomal protein S24e family protein	0.09	Orthogroups_2024-Update
Glyma.10G160300	No alias	Ribosomal protein S24e family protein	0.19	Orthogroups_2024-Update
Glyma.19G242700	No alias	Ribosomal protein S24e family protein	0.14	Orthogroups_2024-Update
Glyma.20G228100	No alias	Ribosomal protein S24e family protein	0.09	Orthogroups_2024-Update
HORVU6Hr1G044840.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
HORVU7Hr1G088580.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.1	Orthogroups_2024-Update
Kfl00638_0040	kfl00638_0040_v1.1	(at3g04920 : 195.0) Ribosomal protein S24e family...	0.03	Orthogroups_2024-Update
LOC_Os06g36160	No alias	40S ribosomal protein S24, putative, expressed	0.05	Orthogroups_2024-Update
MA_119841g0010	No alias	(at3g04920 : 158.0) Ribosomal protein S24e family...	0.11	Orthogroups_2024-Update
MA_119894g0010	No alias	(at3g04920 : 188.0) Ribosomal protein S24e family...	0.09	Orthogroups_2024-Update
PSME_00005358-RA	No alias	(at3g04920 : 189.0) Ribosomal protein S24e family...	0.15	Orthogroups_2024-Update
PSME_00019619-RA	No alias	(at3g04920 : 187.0) Ribosomal protein S24e family...	0.06	Orthogroups_2024-Update
Potri.010G087800	No alias	Ribosomal protein S24e family protein	0.1	Orthogroups_2024-Update
Potri.013G036100	No alias	Ribosomal protein S24e family protein	0.14	Orthogroups_2024-Update
Pp1s13_236V6	No alias	40s ribosomal protein	0.03	Orthogroups_2024-Update
Pp1s204_49V6	No alias	40s ribosomal protein	0.29	Orthogroups_2024-Update
Pp1s37_112V6	No alias	40s ribosomal protein	0.21	Orthogroups_2024-Update
Pp1s450_3V6	No alias	40s ribosomal protein	0.04	Orthogroups_2024-Update
Pp1s450_9V6	No alias	40s ribosomal protein	0.24	Orthogroups_2024-Update
Seita.1G028300.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Seita.4G181700.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.17	Orthogroups_2024-Update
Seita.5G301700.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Sobic.003G280700.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.29	Orthogroups_2024-Update
Sobic.004G099500.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.28	Orthogroups_2024-Update
Sobic.010G166100.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Solyc01g097870	No alias	40S ribosomal protein S24 (AHRD V3.3 *** K4B0H4_SOLLC)	0.06	Orthogroups_2024-Update
Sopen01g041470	No alias	Ribosomal protein S24e	0.06	Orthogroups_2024-Update
Sopen09g027090	No alias	Ribosomal protein S24e	0.18	Orthogroups_2024-Update
evm.model.contig_2036.17	No alias	(at3g04920 : 137.0) Ribosomal protein S24e family...	0.33	Orthogroups_2024-Update
evm.model.tig00000361.64	No alias	(at3g04920 : 129.0) Ribosomal protein S24e family...	0.22	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
BP	GO:0031123	RNA 3'-end processing	IEP	Predicted GO
BP	GO:0031124	mRNA 3'-end processing	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001976	Ribosomal_S24e	26	103

External Links

No external refs found!

Solyc09g065330

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation