Cre08.g372500

Description : IKI3 family protein

Gene families : OG_42_0007541 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007541_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Chlamydomonas release: Cre08.g372500
Cluster	HCCA clusters: Cluster_59

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g24690	No alias	IKI3 family protein	0.01	Orthogroups_2024-Update
GRMZM2G018223	No alias	IKI3 family protein	0.02	Orthogroups_2024-Update
HORVU2Hr1G040310.1	No alias	component *(ELP1) of ELONGATOR transcription elongation complex	0.01	Orthogroups_2024-Update
PSME_00014415-RA	No alias	(at5g13680 : 925.0) A subunit of Elongator, a histone...	0.02	Orthogroups_2024-Update
Seita.9G171700.1	No alias	component *(ELP1) of ELONGATOR transcription elongation complex	0.02	Orthogroups_2024-Update
Sobic.006G086600.1	No alias	component *(ELP1) of ELONGATOR transcription elongation complex	0.02	Orthogroups_2024-Update
evm.model.tig00000219.40	No alias	(at5g13680 : 95.9) A subunit of Elongator, a histone...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	None	Extended
BP	GO:0002098	tRNA wobble uridine modification	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006400	tRNA modification	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0033588	Elongator holoenzyme complex	IEA	InterProScan predictions
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Predicted GO
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Predicted GO
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
BP	GO:0008380	RNA splicing	IEP	Predicted GO
MF	GO:0008536	Ran GTPase binding	IEP	Predicted GO
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Predicted GO
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Predicted GO
MF	GO:0017016	Ras GTPase binding	IEP	Predicted GO
MF	GO:0031267	small GTPase binding	IEP	Predicted GO
MF	GO:0051020	GTPase binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR006849	Elp1	946	1272
IPR006849	Elp1	1	561

External Links

No external refs found!

Cre08.g372500

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation