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  5. Solyc09g073000

Solyc09g073000


Description : Elongation factor Tu (AHRD V3.3 *** K4CUX6_SOLLC)


Gene families : OG_42_0001287 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001287_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc09g073000
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
153081 No alias GTP binding Elongation factor Tu family protein 0.02 Orthogroups_2024-Update
At4g02930 No alias Elongation factor Tu, mitochondrial... 0.05 Orthogroups_2024-Update
Bradi1g01580 No alias GTP binding Elongation factor Tu family protein 0.06 Orthogroups_2024-Update
Brara.C02781.1 No alias translation elongation factor *(EF-Tu) 0.12 Orthogroups_2024-Update
Brara.I00190.1 No alias translation elongation factor *(EF-Tu) 0.05 Orthogroups_2024-Update
Glyma.03G150600 No alias GTP binding Elongation factor Tu family protein 0.1 Orthogroups_2024-Update
Glyma.05G041900 No alias RAB GTPase homolog E1B 0.03 Orthogroups_2024-Update
HORVU0Hr1G026370.1 No alias translation elongation factor *(EF-Tu) 0.02 Orthogroups_2024-Update
HORVU5Hr1G122350.2 No alias translation elongation factor *(EF-Tu) 0.07 Orthogroups_2024-Update
Mp1g14750.1 No alias EF-Tu translation elongation factor 0.02 Orthogroups_2024-Update
PSME_00008134-RA No alias (at4g02930 : 491.0) GTP binding Elongation factor Tu... 0.03 Orthogroups_2024-Update
Potri.014G138100 No alias GTP binding Elongation factor Tu family protein 0.06 Orthogroups_2024-Update
Pp1s16_25V6 No alias elongation factor tu 0.05 Orthogroups_2024-Update
Pp1s191_74V6 No alias elongation factor tu 0.03 Orthogroups_2024-Update
Seita.9G009200.1 No alias translation elongation factor *(EF-Tu) 0.12 Orthogroups_2024-Update
Sobic.001G011000.1 No alias translation elongation factor *(EF-Tu) 0.08 Orthogroups_2024-Update
Sopen09g028810 No alias Elongation factor Tu GTP binding domain 0.07 Orthogroups_2024-Update
evm.model.contig_2048.1 No alias (at4g02930 : 543.0) GTP binding Elongation factor Tu... 0.02 Orthogroups_2024-Update
evm.model.tig00021127.40 No alias (at4g02930 : 461.0) GTP binding Elongation factor Tu... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
CC GO:0000808 origin recognition complex IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005664 nuclear origin of replication recognition complex IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006839 mitochondrial transport IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030150 protein import into mitochondrial matrix IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0044743 protein transmembrane import into intracellular organelle IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0065002 intracellular protein transmembrane transport IEP Predicted GO
BP GO:0070585 protein localization to mitochondrion IEP Predicted GO
BP GO:0071806 protein transmembrane transport IEP Predicted GO
BP GO:0072655 establishment of protein localization to mitochondrion IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1990542 mitochondrial transmembrane transport IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004161 EFTu-like_2 280 349
IPR004160 Transl_elong_EFTu/EF1A_C 354 448
No external refs found!