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  5. Cre10.g417950

Cre10.g417950


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_42_0004523 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004523_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre10.g417950
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
269521 No alias Transducin/WD40 repeat-like superfamily protein 0.01 Orthogroups_2024-Update
At2g40360 No alias Ribosome biogenesis protein BOP1 homolog... 0.07 Orthogroups_2024-Update
Bradi3g39580 No alias Transducin/WD40 repeat-like superfamily protein 0.12 Orthogroups_2024-Update
Bradi3g60762 No alias Transducin/WD40 repeat-like superfamily protein 0.08 Orthogroups_2024-Update
Brara.C02279.1 No alias component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.15 Orthogroups_2024-Update
Glyma.12G167800 No alias Transducin/WD40 repeat-like superfamily protein 0.06 Orthogroups_2024-Update
Kfl00363_0120 kfl00363_0120_v1.1 (at2g40360 : 713.0) Transducin/WD40 repeat-like... 0.1 Orthogroups_2024-Update
LOC_Os07g25440 No alias WD domain, G-beta repeat domain containing protein, expressed 0.02 Orthogroups_2024-Update
Mp2g26050.1 No alias component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.03 Orthogroups_2024-Update
Potri.003G009600 No alias Transducin/WD40 repeat-like superfamily protein 0.01 Orthogroups_2024-Update
Potri.004G222500 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s3_332V6 No alias block of proliferation 1 0.02 Orthogroups_2024-Update
Seita.6G140100.1 No alias component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.15 Orthogroups_2024-Update
Sobic.003G156500.1 No alias component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.1 Orthogroups_2024-Update
Solyc01g103740 No alias No description available 0.03 Orthogroups_2024-Update
Sopen01g046130 No alias WD domain, G-beta repeat 0.01 Orthogroups_2024-Update
Sopen01g046140 No alias BOP1NT (NUC169) domain 0.09 Orthogroups_2024-Update
evm.model.contig_4408.23 No alias (at2g40360 : 214.0) Transducin/WD40 repeat-like... 0.12 Orthogroups_2024-Update
evm.model.tig00000382.38 No alias (at2g40360 : 570.0) Transducin/WD40 repeat-like... 0.16 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
BP GO:0006364 rRNA processing IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 442 474
IPR001680 WD40_repeat 753 792
IPR012953 BOP1_N_dom 163 435
No external refs found!