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  5. Cre10.g428750

Cre10.g428750


Description : RNA binding;RNA binding


Gene families : OG_42_0002877 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002877_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre10.g428750
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
148115 No alias RNA binding;RNA binding 0.02 Orthogroups_2024-Update
At3g11964 No alias rRNA biogenesis protein RRP5... 0.11 Orthogroups_2024-Update
Bradi1g38227 No alias RNA binding;RNA binding 0.1 Orthogroups_2024-Update
Brara.A03376.1 No alias SSU processome assembly factor *(RRP5) 0.07 Orthogroups_2024-Update
Brara.E02887.1 No alias SSU processome assembly factor *(RRP5) 0.03 Orthogroups_2024-Update
GRMZM2G039746 No alias RNA binding;RNA binding 0.03 Orthogroups_2024-Update
GRMZM2G398527 No alias RNA binding;RNA binding 0.03 Orthogroups_2024-Update
Glyma.02G168900 No alias RNA binding;RNA binding 0.04 Orthogroups_2024-Update
Glyma.09G104000 No alias RNA binding;RNA binding 0.08 Orthogroups_2024-Update
HORVU1Hr1G014010.25 No alias SSU processome assembly factor *(RRP5) 0.05 Orthogroups_2024-Update
LOC_Os07g10350 No alias S1 RNA binding domain containing protein, expressed 0.02 Orthogroups_2024-Update
PSME_00005935-RA No alias (at3g11964 : 210.0) RNA binding;RNA binding; FUNCTIONS... 0.03 Orthogroups_2024-Update
Potri.016G062600 No alias RNA binding;RNA binding 0.02 Orthogroups_2024-Update
Seita.2G077000.1 No alias SSU processome assembly factor *(RRP5) 0.1 Orthogroups_2024-Update
Sobic.002G071400.1 No alias SSU processome assembly factor *(RRP5) 0.09 Orthogroups_2024-Update
Solyc03g051900 No alias Protein RRP5-like protein (AHRD V3.3 *** W9QKL3_9ROSA) 0.08 Orthogroups_2024-Update
Sopen03g011350 No alias S1 RNA binding domain 0.07 Orthogroups_2024-Update
evm.model.contig_2143.1 No alias (at3g11964 : 182.0) RNA binding;RNA binding; FUNCTIONS... 0.13 Orthogroups_2024-Update
evm.model.tig00000605.10 No alias (at3g11964 : 197.0) RNA binding;RNA binding; FUNCTIONS... 0.05 Orthogroups_2024-Update
evm.model.tig00000605.11 No alias (at3g11964 : 172.0) RNA binding;RNA binding; FUNCTIONS... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006397 mRNA processing IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000469 cleavage involved in rRNA processing IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Predicted GO
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003029 S1_domain 1626 1700
IPR008847 Suf 2058 2178
No external refs found!