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  5. Cre10.g459600

Cre10.g459600


Description : CCAAT-binding factor


Gene families : OG_42_0005575 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005575_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre10.g459600
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
At1g72440 No alias CCAAT-binding factor [Source:UniProtKB/TrEMBL;Acc:F4IDC2] 0.04 Orthogroups_2024-Update
Bradi3g47770 No alias CCAAT-binding factor 0.05 Orthogroups_2024-Update
Brara.G03129.1 No alias component *(NOC1) of ribosomal-subunit proteome nuclear... 0.06 Orthogroups_2024-Update
Glyma.07G043700 No alias CCAAT-binding factor 0.02 Orthogroups_2024-Update
Glyma.16G012100 No alias CCAAT-binding factor 0.02 Orthogroups_2024-Update
HORVU6Hr1G053890.9 No alias component *(NOC1) of ribosomal-subunit proteome nuclear... 0.02 Orthogroups_2024-Update
Kfl00105_0290 kfl00105_0290_v1.1 (at1g72440 : 437.0) Encodes SLOW WALKER2 (SWA2), a... 0.05 Orthogroups_2024-Update
Pp1s8_147V6 No alias ccaat enhancer binding protein zeta 0.02 Orthogroups_2024-Update
Seita.2G178000.1 No alias component *(NOC1) of ribosomal-subunit proteome nuclear... 0.03 Orthogroups_2024-Update
Sobic.001G453400.2 No alias component *(NOC1) of ribosomal-subunit proteome nuclear... 0.04 Orthogroups_2024-Update
Solyc03g123530 No alias CCAAT/enhancer-binding zeta (AHRD V3.3 *** A0A0B0MUY0_GOSAR) 0.05 Orthogroups_2024-Update
Sopen03g041300 No alias CBF/Mak21 family 0.04 Orthogroups_2024-Update
evm.model.contig_4523.5 No alias (at1g72440 : 162.0) Encodes SLOW WALKER2 (SWA2), a... 0.02 Orthogroups_2024-Update
evm.model.tig00021293.22 No alias no hits & (original description: no original description) 0.08 Orthogroups_2024-Update
evm.model.tig00021293.23 No alias (at1g72440 : 137.0) Encodes SLOW WALKER2 (SWA2), a... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Predicted GO
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003724 RNA helicase activity IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004004 ATP-dependent RNA helicase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0004549 tRNA-specific ribonuclease activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008186 RNA-dependent ATPase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Predicted GO
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR005612 CCAAT-binding_factor 607 850
No external refs found!