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Description : U3 ribonucleoprotein (Utp) family protein
Gene families : OG_42_0004122 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004122_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Chlamydomonas release: Cre11.g478950 | |
| Cluster | HCCA clusters: Cluster_26 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At4g02400 | No alias | U3 ribonucleoprotein (Utp) family protein... | 0.08 | Orthogroups_2024-Update | |
| At5g08600 | No alias | U3 ribonucleoprotein (Utp) family protein... | 0.03 | Orthogroups_2024-Update | |
| Bradi1g62850 | No alias | U3 ribonucleoprotein (Utp) family protein | 0.11 | Orthogroups_2024-Update | |
| Brara.B02606.1 | No alias | SSU processome assembly factor *(UTP14) | 0.06 | Orthogroups_2024-Update | |
| HORVU7Hr1G080560.5 | No alias | SSU processome assembly factor *(UTP14) | 0.04 | Orthogroups_2024-Update | |
| Kfl00684_0090 | kfl00684_0090_v1.1 | (at4g02400 : 189.0) U3 ribonucleoprotein (Utp) family... | 0.06 | Orthogroups_2024-Update | |
| Potri.002G203700 | No alias | U3 ribonucleoprotein (Utp) family protein | 0.02 | Orthogroups_2024-Update | |
| Pp1s78_50V6 | No alias | No description available | 0.02 | Orthogroups_2024-Update | |
| Seita.9G409300.1 | No alias | SSU processome assembly factor *(UTP14) | 0.03 | Orthogroups_2024-Update | |
| Sobic.001G376900.1 | No alias | SSU processome assembly factor *(UTP14) | 0.04 | Orthogroups_2024-Update | |
| Solyc09g005760 | No alias | U3 small nucleolar RNA-associated protein, putative... | 0.01 | Orthogroups_2024-Update | |
| evm.model.contig_2144.4 | No alias | (gnl|cdd|68872 : 97.4) no description available &... | 0.03 | Orthogroups_2024-Update | |
| evm.model.tig00020554.20 | No alias | no hits & (original description: no original description) | 0.1 | Orthogroups_2024-Update | |
| evm.model.tig00020554.21 | No alias | (at4g02400 : 114.0) U3 ribonucleoprotein (Utp) family... | 0.1 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Predicted GO |
| MF | GO:0000213 | tRNA-intron endonuclease activity | IEP | Predicted GO |
| BP | GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | IEP | Predicted GO |
| BP | GO:0000469 | cleavage involved in rRNA processing | IEP | Predicted GO |
| MF | GO:0001882 | nucleoside binding | IEP | Predicted GO |
| MF | GO:0001883 | purine nucleoside binding | IEP | Predicted GO |
| MF | GO:0003674 | molecular_function | IEP | Predicted GO |
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003724 | RNA helicase activity | IEP | Predicted GO |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Predicted GO |
| MF | GO:0004004 | ATP-dependent RNA helicase activity | IEP | Predicted GO |
| MF | GO:0004386 | helicase activity | IEP | Predicted GO |
| MF | GO:0004518 | nuclease activity | IEP | Predicted GO |
| MF | GO:0004521 | endoribonuclease activity | IEP | Predicted GO |
| MF | GO:0004549 | tRNA-specific ribonuclease activity | IEP | Predicted GO |
| MF | GO:0005488 | binding | IEP | Predicted GO |
| MF | GO:0005524 | ATP binding | IEP | Predicted GO |
| MF | GO:0005525 | GTP binding | IEP | Predicted GO |
| CC | GO:0005575 | cellular_component | IEP | Predicted GO |
| CC | GO:0005634 | nucleus | IEP | Predicted GO |
| CC | GO:0005730 | nucleolus | IEP | Predicted GO |
| CC | GO:0005732 | small nucleolar ribonucleoprotein complex | IEP | Predicted GO |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Predicted GO |
| BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
| BP | GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | IEP | Predicted GO |
| BP | GO:0006396 | RNA processing | IEP | Predicted GO |
| BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
| MF | GO:0008026 | ATP-dependent helicase activity | IEP | Predicted GO |
| BP | GO:0008033 | tRNA processing | IEP | Predicted GO |
| MF | GO:0008134 | transcription factor binding | IEP | Predicted GO |
| MF | GO:0008144 | drug binding | IEP | Predicted GO |
| MF | GO:0008168 | methyltransferase activity | IEP | Predicted GO |
| MF | GO:0008186 | RNA-dependent ATPase activity | IEP | Predicted GO |
| BP | GO:0009987 | cellular process | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
| MF | GO:0016462 | pyrophosphatase activity | IEP | Predicted GO |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Predicted GO |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Predicted GO |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Predicted GO |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Predicted GO |
| MF | GO:0016887 | ATPase activity | IEP | Predicted GO |
| MF | GO:0016892 | endoribonuclease activity, producing 3'-phosphomonoesters | IEP | Predicted GO |
| MF | GO:0016894 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters | IEP | Predicted GO |
| MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
| MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Predicted GO |
| MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | Predicted GO |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | Predicted GO |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Predicted GO |
| CC | GO:0030684 | preribosome | IEP | Predicted GO |
| CC | GO:0032040 | small-subunit processome | IEP | Predicted GO |
| MF | GO:0032549 | ribonucleoside binding | IEP | Predicted GO |
| MF | GO:0032550 | purine ribonucleoside binding | IEP | Predicted GO |
| MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Predicted GO |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Predicted GO |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Predicted GO |
| CC | GO:0034457 | Mpp10 complex | IEP | Predicted GO |
| BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
| MF | GO:0036094 | small molecule binding | IEP | Predicted GO |
| MF | GO:0043167 | ion binding | IEP | Predicted GO |
| MF | GO:0043168 | anion binding | IEP | Predicted GO |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
| BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044428 | nuclear part | IEP | Predicted GO |
| CC | GO:0044452 | nucleolar part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
| MF | GO:0070035 | purine NTP-dependent helicase activity | IEP | Predicted GO |
| BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
| BP | GO:0090305 | nucleic acid phosphodiester bond hydrolysis | IEP | Predicted GO |
| BP | GO:0090501 | RNA phosphodiester bond hydrolysis | IEP | Predicted GO |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Predicted GO |
| MF | GO:0097747 | RNA polymerase activity | IEP | Predicted GO |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Predicted GO |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Predicted GO |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |