1. Home
  2. Species
  3. Chlamydomonas reinhardtii
  4. Sequence
  5. Cre12.g525200

Cre12.g525200


Description : homolog of nucleolar protein NOP56


Gene families : OG_42_0003242 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003242_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre12.g525200
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
167367 No alias homolog of nucleolar protein NOP56 0.01 Orthogroups_2024-Update
At1g56110 No alias At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7] 0.07 Orthogroups_2024-Update
Bradi1g18730 No alias NOP56-like pre RNA processing ribonucleoprotein 0.12 Orthogroups_2024-Update
Bradi1g32180 No alias homolog of nucleolar protein NOP56 0.09 Orthogroups_2024-Update
Brara.C03437.1 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.07 Orthogroups_2024-Update
Brara.F00004.1 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.09 Orthogroups_2024-Update
Brara.H00011.1 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.08 Orthogroups_2024-Update
GRMZM2G110233 No alias homolog of nucleolar protein NOP56 0.01 Orthogroups_2024-Update
Glyma.05G046400 No alias homolog of nucleolar protein NOP56 0.03 Orthogroups_2024-Update
Glyma.07G102600 No alias homolog of nucleolar protein NOP56 0.01 Orthogroups_2024-Update
Glyma.17G128400 No alias homolog of nucleolar protein NOP56 0.03 Orthogroups_2024-Update
HORVU1Hr1G083960.3 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.02 Orthogroups_2024-Update
HORVU2Hr1G022140.3 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.06 Orthogroups_2024-Update
Kfl00017_0010 kfl00017_0010_v1.... (at1g56110 : 637.0) NOP56-like protein; homolog of... 0.02 Orthogroups_2024-Update
LOC_Os03g22880 No alias nucleolar protein 5A, putative, expressed 0.02 Orthogroups_2024-Update
Mp2g23840.1 No alias snoRNP scaffold component Nop56 of snoRNP rRNA... 0.04 Orthogroups_2024-Update
PSME_00040484-RA No alias (at1g56110 : 422.0) NOP56-like protein; homolog of... 0.02 Orthogroups_2024-Update
Potri.012G095400 No alias homolog of nucleolar protein NOP56 0.03 Orthogroups_2024-Update
Potri.015G092900 No alias homolog of nucleolar protein NOP56 0.08 Orthogroups_2024-Update
Pp1s15_447V6 No alias No description available 0.03 Orthogroups_2024-Update
Seita.9G403000.1 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.11 Orthogroups_2024-Update
Sobic.001G371100.1 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.1 Orthogroups_2024-Update
Solyc01g100570 No alias Nucleolar protein NOP56 (AHRD V3.3 *** A0A061G5W0_THECC) 0.07 Orthogroups_2024-Update
Sopen01g044070 No alias Putative snoRNA binding domain 0.08 Orthogroups_2024-Update
evm.model.tig00001073.20 No alias (at1g56110 : 570.0) NOP56-like protein; homolog of... 0.12 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
BP GO:0000469 cleavage involved in rRNA processing IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016778 diphosphotransferase activity IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0036265 RNA (guanine-N7)-methylation IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Predicted GO
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002687 Nop_dom 176 408
IPR012974 NOP5_N 4 68
No external refs found!