Cre12.g529600


Description : nuclear RNA polymerase A1


Gene families : OG_42_0005280 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005280_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre12.g529600
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
At3g57660 No alias DNA-directed RNA polymerase I subunit 1... 0.06 Orthogroups_2024-Update
Bradi1g02621 No alias nuclear RNA polymerase A1 0.12 Orthogroups_2024-Update
Brara.I03983.1 No alias component *(NRPA1) of RNA polymerase I complex 0.09 Orthogroups_2024-Update
GRMZM2G028132 No alias nuclear RNA polymerase A1 0.02 Orthogroups_2024-Update
Glyma.10G095200 No alias nuclear RNA polymerase A1 0.03 Orthogroups_2024-Update
HORVU5Hr1G117770.4 No alias component *(NRPA1) of RNA polymerase I complex 0.08 Orthogroups_2024-Update
MA_681731g0010 No alias (at3g57660 : 192.0) Encodes a subunit of RNA polymerase... 0.01 Orthogroups_2024-Update
Mp6g07700.1 No alias subunit 1 of Pol I RNA polymerase 0.02 Orthogroups_2024-Update
Potri.006G055300 No alias nuclear RNA polymerase A1 0.03 Orthogroups_2024-Update
Pp1s338_40V6 No alias dna-directed rna polymerase i largest 0.08 Orthogroups_2024-Update
Seita.4G217700.1 No alias component *(NRPA1) of RNA polymerase I complex 0.1 Orthogroups_2024-Update
Sobic.009G217200.1 No alias component *(NRPA1) of RNA polymerase I complex 0.1 Orthogroups_2024-Update
Solyc10g080350 No alias DNA-directed RNA polymerase subunit (AHRD V3.3 *** K4D2S5_SOLLC) 0.15 Orthogroups_2024-Update
Sopen10g030910 No alias RNA polymerase Rpb1, domain 5 0.1 Orthogroups_2024-Update
evm.model.contig_4406.10 No alias (at3g57660 : 696.0) Encodes a subunit of RNA polymerase... 0.05 Orthogroups_2024-Update
evm.model.tig00000203.25 No alias (at3g57660 : 513.0) Encodes a subunit of RNA polymerase... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA InterProScan predictions
BP GO:0006351 transcription, DNA-templated IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007080 RNA_pol_Rpb1_1 12 234
IPR007083 RNA_pol_Rpb1_4 1088 1163
IPR007081 RNA_pol_Rpb1_5 1170 1850
IPR007066 RNA_pol_Rpb1_3 788 988
IPR000722 RNA_pol_asu 578 783
No external refs found!