Solyc09g083370

Description : Ribosomal protein S19 family protein (AHRD V3.3 *** AT5G09510.1)

Gene families : OG_42_0001901 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001901_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc09g083370
Cluster	HCCA clusters: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
172403	No alias	Ribosomal protein S19 family protein	0.13	Orthogroups_2024-Update
At1g04270	No alias	40S ribosomal protein S15-1...	0.08	Orthogroups_2024-Update
At5g09510	No alias	40S ribosomal protein S15-4...	0.06	Orthogroups_2024-Update
Bradi1g05340	No alias	Ribosomal protein S19 family protein	0.12	Orthogroups_2024-Update
Bradi1g55280	No alias	Ribosomal protein S19 family protein	0.07	Orthogroups_2024-Update
Brara.H03058.1	No alias	component *(uS19) of small ribosomal-subunit (SSU) proteome	0.24	Orthogroups_2024-Update
Brara.I05501.1	No alias	component *(uS19) of small ribosomal-subunit (SSU) proteome	0.1	Orthogroups_2024-Update
Brara.J00241.1	No alias	component *(uS19) of small ribosomal-subunit (SSU) proteome	0.19	Orthogroups_2024-Update
Cre08.g360900	No alias	Ribosomal protein S19 family protein	0.18	Orthogroups_2024-Update
Glyma.07G269600	No alias	Ribosomal protein S19 family protein	0.07	Orthogroups_2024-Update
Glyma.08G042300	No alias	Ribosomal protein S19 family protein	0.14	Orthogroups_2024-Update
Glyma.17G004300	No alias	Ribosomal protein S19 family protein	0.13	Orthogroups_2024-Update
HORVU2Hr1G057430.1	No alias	component *(uS19) of small ribosomal-subunit (SSU) proteome	0.12	Orthogroups_2024-Update
Kfl00160_0050	kfl00160_0050_v1.1	(p31674\|rs15_orysa : 187.0) 40S ribosomal protein S15 -...	0.12	Orthogroups_2024-Update
LOC_Os03g58430	No alias	40S ribosomal protein S15, putative, expressed	0.05	Orthogroups_2024-Update
LOC_Os07g08660	No alias	40S ribosomal protein S15, putative, expressed	0.03	Orthogroups_2024-Update
MA_14543g0010	No alias	(p31674\|rs15_orysa : 245.0) 40S ribosomal protein S15 -...	0.06	Orthogroups_2024-Update
Mp3g15000.1	No alias	component RPS15 of SSU proteome	0.03	Orthogroups_2024-Update
PSME_00033145-RA	No alias	(p31674\|rs15_orysa : 265.0) 40S ribosomal protein S15 -...	0.15	Orthogroups_2024-Update
Potri.005G219700	No alias	Ribosomal protein S19 family protein	0.03	Orthogroups_2024-Update
Pp1s13_413V6	No alias	40s ribosomal protein s15	0.16	Orthogroups_2024-Update
Pp1s223_96V6	No alias	40s ribosomal protein s15	0.03	Orthogroups_2024-Update
Pp1s47_42V6	No alias	40s ribosomal protein s15	0.16	Orthogroups_2024-Update
Pp1s91_124V6	No alias	40s ribosomal protein s15	0.15	Orthogroups_2024-Update
Seita.2G059900.1	No alias	component *(uS19) of small ribosomal-subunit (SSU) proteome	0.12	Orthogroups_2024-Update
Seita.3G185000.1	No alias	component *(uS19) of small ribosomal-subunit (SSU) proteome	0.01	Orthogroups_2024-Update
Seita.9G053600.1	No alias	component *(uS19) of small ribosomal-subunit (SSU) proteome	0.14	Orthogroups_2024-Update
Sobic.001G054900.1	No alias	component *(uS19) of small ribosomal-subunit (SSU) proteome	0.26	Orthogroups_2024-Update
Sobic.002G056200.1	No alias	component *(uS19) of small ribosomal-subunit (SSU) proteome	0.12	Orthogroups_2024-Update
Sobic.009G191200.1	No alias	component *(uS19) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Sopen02g026630	No alias	Ribosomal protein S19	0.2	Orthogroups_2024-Update
Sopen06g018940	No alias	Ribosomal protein S19	0.15	Orthogroups_2024-Update
Sopen09g032290	No alias	Ribosomal protein S19	0.04	Orthogroups_2024-Update
evm.model.contig_651.1	No alias	(at5g09500 : 219.0) Ribosomal protein S19 family...	0.24	Orthogroups_2024-Update
evm.model.tig00020830.61	No alias	(p31674\|rs15_orysa : 236.0) 40S ribosomal protein S15 -...	0.23	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003724	RNA helicase activity	IEP	Predicted GO
MF	GO:0004004	ATP-dependent RNA helicase activity	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
MF	GO:0004813	alanine-tRNA ligase activity	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
BP	GO:0006419	alanyl-tRNA aminoacylation	IEP	Predicted GO
BP	GO:0006479	protein methylation	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
MF	GO:0008026	ATP-dependent helicase activity	IEP	Predicted GO
MF	GO:0008168	methyltransferase activity	IEP	Predicted GO
MF	GO:0008186	RNA-dependent ATPase activity	IEP	Predicted GO
BP	GO:0008213	protein alkylation	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
CC	GO:0030014	CCR4-NOT complex	IEP	Predicted GO
BP	GO:0032259	methylation	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
BP	GO:0043414	macromolecule methylation	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
MF	GO:0070035	purine NTP-dependent helicase activity	IEP	Predicted GO
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002222	Ribosomal_S19	49	134

External Links

No external refs found!

Solyc09g083370

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation